diff MassdbConn.R @ 1:253d531a0193 draft

planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 36c9d8099c20a1ae848f1337c16564335dd8fb2b

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/MassdbConn.R	Sat Sep 03 17:02:01 2016 -0400
@@ -0,0 +1,31 @@
+if ( ! exists('MassdbConn')) {
+
+	source('BiodbConn.R')
+
+	#####################
+	# CLASS DECLARATION #
+	#####################
+	
+	MassdbConn <- setRefClass("MassdbConn", contains = "BiodbConn")
+
+	###############################
+	# GET CHROMATOGRAPHIC COLUMNS #
+	###############################
+	
+	# Get a list of chromatographic columns contained in this database.
+	# compound.ids  A list of compound IDs used to filter results.
+	# The returned value is a data.frame with two columns : one for the ID (BIODB.ID) and another one for the title (BIODB.TITLE).
+	MassdbConn$methods( getChromCol = function(compound.ids = NULL) {
+		stop("Method getChromCol() is not implemented in concrete class.")
+	})
+
+	#################
+	# GET MZ VALUES #
+	#################
+	
+	# Returns a numeric vector of all masses stored inside the database.
+	MassdbConn$methods( getMzValues = function(mode = NULL, max.results = NA_integer_) {
+		stop("Method getMzValues() not implemented in concrete class.")
+	})
+
+}