diff todf.R @ 0:e66bb061af06 draft

planemo upload for repository https://github.com/workflow4metabolomics/lcmsmatching.git commit 3529b25417f8e1a5836474c9adec4b696d35099d-dirty

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/todf.R	Tue Jul 12 12:02:37 2016 -0400
@@ -0,0 +1,34 @@
+source('tolst.R')
+
+# Convert a list of key/value lists or a list of objects into a data frame. Each key becomes a column.
+# x             The object to convert to data frame. Either a list of key/value lists, or a list of objects.
+# rm_na_col     If true, remove all columns that contain only NA values.
+todf <- function(x, rm_na_col = FALSE) {
+
+	df <- data.frame()
+
+	# x not null ?
+	if ( ! is.null(x) && length(x) > 0) {
+
+		# fill data frame
+		for (i in 1:length(x)) {
+			lst <- if (typeof(x[[i]]) == 'S4') tolst(x[[i]]) else x[[i]]
+			for (k in names(lst)) {
+				v <- x[[i]][[k]]
+				df[i , k] <- if (length(v) > 1) paste0(v, collapse = ';') else v
+			}
+		}
+
+		# remove NA columns
+		if (rm_na_col) {
+			drop <- character()
+			for (col in names(df))
+				if (all(is.na(df[[col]])))
+					drop <- c(drop, col)
+			if (length(drop) > 0)
+				df <- df[, !(names(df) %in% drop)]
+		}
+	}
+
+	return(df)
+}