comparison tool_dependencies.xml @ 4:49c1ed90d6d6 draft

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4:49c1ed90d6d6

<?xml version="1.0"?>
<tool_dependency>
    <package name="R" version="3.0.3">
        <repository changeset_revision="6e0eee4ea4e1" name="package_r_3_1_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="xcms" version="1.44.0">
      <install version="1.0">
          <actions>
              <action type="setup_r_environment">
                  <repository changeset_revision="6e0eee4ea4e1" name="package_r_3_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                      <package name="R" version="3.0.3" />
                    </repository>
    <package>http://cran.ms.unimelb.edu.au/src/contrib/Rcpp_0.11.6.tar.gz?raw=true</package>
    <package>http://bioc.ism.ac.jp//packages/3.1/bioc/src/contrib/BiocGenerics_0.14.0.tar.gz?raw=true</package>
    <package>http://bioc.ism.ac.jp//packages/3.1/bioc/src/contrib/Biobase_2.28.0.tar.gz?raw=true</package>
    <package>http://bioc.ism.ac.jp//packages/3.1/bioc/src/contrib/ProtGenerics_1.0.0.tar.gz?raw=true</package>
    <package>http://bioc.ism.ac.jp//packages/3.1/bioc/src/contrib/mzR_2.2.1.tar.gz?raw=true</package>
    <package>http://bioc.ism.ac.jp//packages/3.1/bioc/src/contrib/xcms_1.44.0.tar.gz?raw=true</package>
               </action>
            </actions>
        </install>
        <readme>
            xcms is a package from Bioconductor containing all needed steps for GC-LCMS analysis begening with the preprocessing and ending with
            the exploratory analysis.
            integrated to the main galaxy toolshed by [e-mail] for studies purpose and trainee ship on mass spectrometry 
            analysis workflows and pipelines answering for some biological questions such as biomarquers identification extraction and  	
            slection. targeted and untargeted (label free) quantification. 
        </readme>
    </package>
</tool_dependency>