Mercurial > repos > proteomisc > gcms_lcms_analysis

view tool_dependencies.xml @ 6:8fa86fa43060 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author proteomisc
date Sat, 16 May 2015 05:29:17 -0400
parents
children
line wrap: on
line source

<?xml version="1.0"?>
<tool_dependency>
    <package name="R" version="3.0.3">
        <repository changeset_revision="6e0eee4ea4e1" name="package_r_3_1_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="xcms" version="1.44.0">
      <install version="1.0">
          <actions>
              <action type="setup_r_environment">
                  <repository changeset_revision="6e0eee4ea4e1" name="package_r_3_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                      <package name="R" version="3.0.3" />
                    </repository>
    <package>http://cran.ms.unimelb.edu.au/src/contrib/Rcpp_0.11.6.tar.gz?raw=true</package>
    <package>http://bioc.ism.ac.jp//packages/3.1/bioc/src/contrib/BiocGenerics_0.14.0.tar.gz?raw=true</package>
    <package>http://bioc.ism.ac.jp//packages/3.1/bioc/src/contrib/Biobase_2.28.0.tar.gz?raw=true</package>
    <package>http://bioc.ism.ac.jp//packages/3.1/bioc/src/contrib/ProtGenerics_1.0.0.tar.gz?raw=true</package>
    <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/zlibbioc_1.14.0.tar.gz?raw=true</package>
    <package>http://bioc.ism.ac.jp//packages/3.1/bioc/src/contrib/mzR_2.2.1.tar.gz?raw=true</package>
    <package>http://bioc.ism.ac.jp//packages/3.1/bioc/src/contrib/xcms_1.44.0.tar.gz?raw=true</package>
               </action>
            </actions>
        </install>
        <readme>
            xcms is a package from Bioconductor containing all needed steps for GC-LCMS analysis begening with the preprocessing and ending with
            the exploratory analysis.
            integrated to the main galaxy toolshed by bensellak.taoufik@gmail.com for studies purpose and trainee ship on mass spectrometry 
            analysis workflows and pipelines answering for some biological questions such as biomarquers identification extraction and  	
            slection. targeted and untargeted (label free) quantification. 
        </readme>
    </package>
</tool_dependency>