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comparison preprocess_datasets/Affymetrix_Preprocessing_Functions.R @ 19:471c893de71f draft

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author proteomisc
date Sun, 03 Dec 2023 16:46:42 +0000
parents 4b3faf457c37
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18:44b7cdfe58ae 19:471c893de71f
1 AffymetrixPreprocessingFunction<-function(path="",rawdata,backgroundcorrection_method,normalization_method,summary_method,datasetsource="",listfullnames="") 1 AffymetrixPreprocessingFunction<-function(rawdata,backgroundcorrection_method,normalization_method,summary_method,datasetsource="",listfullnames="")
2 { 2 {
3 colnames(exprs(rawdata))<-listfullnames 3 colnames(exprs(rawdata))<-listfullnames
4 data.bg<-bg.correct(rawdata, method=backgroundcorrection_method) 4 data.bg<-bg.correct(rawdata, method=backgroundcorrection_method)
5 data.norm<-normalize(data.bg, method=normalization_method) 5 data.norm<-normalize(data.bg, method=normalization_method)
6 data.sm<-threestep(data.norm, background=F, normalize=F,summary.method=summary_method) 6 data.sm<-threestep(data.norm, background=F, normalize=F,summary.method=summary_method)