Mercurial > repos > proteomisc > preprocess_dataset
comparison preprocess_datasets/Preprocess_DataSet.xml @ 1:b65395d3686c draft
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| author | proteomisc |
|---|---|
| date | Sat, 02 Dec 2023 15:25:38 +0000 |
| parents | ebf6607b4e6a |
| children | e13459f1aecb |
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| 0:ebf6607b4e6a | 1:b65395d3686c |
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| 1 <tool id="Preprocess_DataSet" name="Preprocess MicroArrays DataSets" version="1"> | 1 <tool id="Preprocess_DataSet" name="Preprocess MicroArrays DataSets" version="2"> |
| 2 <description> Preprocessing microarrays datasets. It contains Background Correction, Normalization within arrays, between arrays (depending on the number of channels) and summarization. </description> | 2 <description> Preprocessing microarrays datasets.Contains Background Correction, Normalization within arrays, between arrays (depending on the number of channels) and summarization. </description> |
| 3 <macros> | 3 <macros> |
| 4 <import>citations.xml</import> | 4 <import>citations.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <requirements> | 6 <requirements> |
| 7 <requirement type="package">r-base</requirement> | 7 <requirement type="package">r-base</requirement> |
| 8 <requirement type="package">r-batch</requirement> | 8 <requirement type="package">r-batch</requirement> |
| 9 <requirement type="package">bioconductor-affyPLM</requirement> | 9 <requirement type="package">bioconductor-affyplm</requirement> |
| 10 <requirement type="package">bioconductor-affy</requirement> | |
| 10 <requirement type="package">bioconductor-annotate</requirement> | 11 <requirement type="package">bioconductor-annotate</requirement> |
| 11 <requirement type="package">r-knitr</requirement> | 12 <requirement type="package">r-knitr</requirement> |
| 12 <requirement type="package">bioconductor-marray</requirement> | 13 <requirement type="package">bioconductor-marray</requirement> |
| 13 <requirement type="package">r-idpmisc</requirement> | 14 <requirement type="package">r-idpmisc</requirement> |
| 14 <requirement type="package">r-kernsmooth</requirement> | 15 <requirement type="package">r-kernsmooth</requirement> |
| 16 <requirement type="package">r-rmarkdown</requirement> | |
| 17 <requirement type="package">r-markdown</requirement> | |
| 18 <requirement type="package">bioconductor-limma</requirement> | |
| 19 <requirement type="package">bioconductor-biocinstaller</requirement> | |
| 20 <requirement type="package">r-idpmisc</requirement> | |
| 21 | |
| 15 </requirements> | 22 </requirements> |
| 16 <stdio> | 23 <stdio> |
| 17 <exit_code range="1:" level="fatal" /> | 24 <exit_code range="1:" level="fatal" /> |
| 18 </stdio> | 25 </stdio> |
| 19 <command> | 26 <command> |