Mercurial > repos > proteore > filter_keywords_values
comparison README.rst @ 6:c6ba1e6f6869 draft
planemo upload commit 74b6a02a2e64d02551c05b52d571b888ac73cac9
author | proteore |
---|---|
date | Fri, 20 Apr 2018 09:07:23 -0400 |
parents | 1e9911190142 |
children | 6f32c1e12572 |
comparison
equal
deleted
inserted
replaced
5:1e9911190142 | 6:c6ba1e6f6869 |
---|---|
11 | 11 |
12 Contact support@proteore.org for any questions or concerns about the Galaxy implementation of this tool. | 12 Contact support@proteore.org for any questions or concerns about the Galaxy implementation of this tool. |
13 | 13 |
14 ------------------------------------------------------- | 14 ------------------------------------------------------- |
15 | 15 |
16 This tool allows to filter out data according to your specific needs (e.g. contaminants, non-significant values or related to a particular annotation) from a proteomics results file (e.g. MaxQuant or Proline output). | 16 This tool allows to remove unneeded data (e.g. contaminants, non-significant values) from a proteomics results file (e.g. MaxQuant or Proline output). |
17 | 17 |
18 **For each row, if there are more than one protein IDs/protein names/gene names, only the first one will be considered in the output** | 18 **For each row, if there are more than one protein IDs/protein names/gene names, only the first one will be considered in the output** |
19 | 19 |
20 **Filter the file by keywords** | 20 **Filter the file by keywords** |
21 | 21 |
29 | 29 |
30 TRYP_PIG | 30 TRYP_PIG |
31 | 31 |
32 ALDOA_RABBIT | 32 ALDOA_RABBIT |
33 | 33 |
34 **The line that contains these keywords will be filtered from input file and provided in a separate file.** | 34 **The line that contains these keywords will be eliminated from input file.** |
35 | 35 |
36 **Keywords search can be applied by performing either exact match or partial one by using the following option** | 36 **Keywords search can be applied by performing either exact match or partial one by using the following option** |
37 | 37 |
38 - If you choose **Yes**, only the fields that contains exactly the same content will be filtered. | 38 - If you choose **Yes**, only the fields that contains exactly the same content will be removed. |
39 | 39 |
40 - If you choose **No**, all the fields containing the keyword will be filtered. | 40 - If you choose **No**, all the fields containing the keyword will be removed. |
41 | 41 |
42 For example: | 42 For example: |
43 | 43 |
44 **Yes** option (exact match) selected using the keyword "kinase": only lines which contain exactly "kinase" is filtered (and not "Kinase"). | 44 **Yes** option (exact match) selected using the keyword "kinase": only lines which contain exactly "kinase" is removed. |
45 | 45 |
46 **No** option (partial match) for "kinase": not only lines which contain "kinase" but also lines with "alpha-kinase" (and so on) are removed. | 46 **No** option (partial match) for "kinase": not only lines which contain "kinase" but also lines with "alpha-kinase" (and so on) are removed. |
47 | 47 |
48 **Filter the file by values** | 48 **Filter the file by values** |
49 | 49 |
55 | 55 |
56 The tool will produce 2 output files. | 56 The tool will produce 2 output files. |
57 | 57 |
58 * A text file containing the resulting filtered input file. | 58 * A text file containing the resulting filtered input file. |
59 | 59 |
60 * A text file containing the rows that have been filtered from the input file. | 60 * A text file containing the rows removed from the input file. |