Mercurial > repos > proteore > proteore_build_protein_interaction_maps

diff test-data/Lacombe_geneID.tsv @ 2:99f6a94c1ade draft

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planemo upload commit 4ba1ebe7b3f5e3fabf78b5fed7ed0b92e2cbf9e5-dirty
author proteore
date Fri, 28 Jun 2019 05:06:57 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/Lacombe_geneID.tsv	Fri Jun 28 05:06:57 2019 -0400
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+Protein accession number (UniProt)	Protein name	Number of peptides (razor + unique)	GeneID
+P15924	Desmoplakin	69	1832
+P02538	Keratin, type II cytoskeletal 6A	53	3853
+P02768	Serum albumin	44	213
+P08779	Keratin, type I cytoskeletal 16	29	3868
+Q02413	Desmoglein-1	24	1828
+P07355	Annexin A2;Putative annexin A2-like protein	22	302
+P14923	Junction plakoglobin	22	3728
+P02788	Lactotransferrin	21	4057
+Q9HC84	Mucin-5B	21	727897
+P29508	Serpin B3	20	6317
+P63261	Actin, cytoplasmic 2	19	71
+Q8N1N4	Keratin, type II cytoskeletal 78	18	196374
+Q04695	Keratin, type I cytoskeletal 17	18	3872
+P01876	Ig alpha-1 chain C region	16	NA
+Q01469	Fatty acid-binding protein 5, epidermal	15	2171
+P31944	Caspase-14	15	23581
+P01833	Polymeric immunoglobulin receptor	15	5284
+P06733	Alpha-enolase	15	2023
+P25311	Zinc-alpha-2-glycoprotein	15	563
+Q15149	Plectin	15	5339
+P19013	Keratin, type II cytoskeletal 4	13	NA
+Q6KB66	Keratin, type II cytoskeletal 80	13	144501
+Q08188	Protein-glutamine gamma-glutamyltransferase E	12	7053
+P13646	Keratin, type I cytoskeletal 13	11	3860
+Q86YZ3	Hornerin	11	388697
+P04259	Keratin, type II cytoskeletal 6B	10	3854
+P02545	Prelamin-A/C;Lamin-A/C	10	4000
+P04083	Annexin A1	10	301
+P11021	78 kDa glucose-regulated protein	10	3309
+P02787	Serotransferrin	9	7018
+P04040	Catalase	9	847
+P31151	Protein S100-A7	9	6278
+P31947	14-3-3 protein sigma	9	2810
+Q96P63	Serpin B12	9	89777
+P14618	Pyruvate kinase PKM	9	5315
+P60174	Triosephosphate isomerase	9	7167
+Q06830	Peroxiredoxin-1	9	5052
+P01040	Cystatin-A	8	1475
+P05089	Arginase-1	8	383
+P01834	Ig kappa chain C region	8	NA
+P04406	Glyceraldehyde-3-phosphate dehydrogenase	8	2597
+P0DMV9	Heat shock 70 kDa protein 1B	8	3304;3303
+P13639	Elongation factor 2	8	1938
+P35579	Myosin-9	8	4627
+P68371	Tubulin beta-4B chain	8	10383
+Q8WVV4	Protein POF1B	8	79983
+O75635	Serpin B7	7	8710
+P01857	Ig gamma-1 chain C region	7	NA
+P61626	Lysozyme C	7	4069
+P68363	Tubulin alpha-1B chain	7	10376
+P01009	Alpha-1-antitrypsin;Short peptide from AAT	6	5265
+P07900	Heat shock protein HSP 90-alpha	6	3320
+Q9NZH8	Interleukin-36 gamma	6	56300
+O43707	Alpha-actinin-4;Alpha-actinin-1	6	81
+O75223	Gamma-glutamylcyclotransferase	6	79017
+P00338	L-lactate dehydrogenase A chain	6	3939
+P07339	Cathepsin D	6	1509
+P62987	Ubiquitin-60S ribosomal protein L40	6	7311
+P10599	Thioredoxin	6	7295
+Q9UGM3	Deleted in malignant brain tumors 1 protein	6	1755
+Q9UI42	Carboxypeptidase A4	6	51200
+P47929	Galectin-7	5	3963;653499
+Q13867	Bleomycin hydrolase	5	642
+Q6P4A8	Phospholipase B-like 1	5	79887
+O75369	Filamin-B	5	2317
+P00441	Superoxide dismutase [Cu-Zn]	5	6647
+P04792	Heat shock protein beta-1	5	3315
+P11142	Heat shock cognate 71 kDa protein	5	3312
+P58107	Epiplakin	5	83481
+P60842	Eukaryotic initiation factor 4A-I	5	1973
+P62937	Peptidyl-prolyl cis-trans isomerase A	5	5478
+P63104	14-3-3 protein zeta/delta	5	7534
+Q92820	Gamma-glutamyl hydrolase	5	8836
+O75342	Arachidonate 12-lipoxygenase, 12R-type	4	242
+P09211	Glutathione S-transferase P	4	2950
+P31025	Lipocalin-1	4	3933
+P48594	Serpin B4	4	6318
+Q14574	Desmocollin-3	4	1825
+Q5T750	Skin-specific protein 32	4	100129271
+Q6UWP8	Suprabasin	4	374897
+O60911	Cathepsin L2	4	1515
+P00558	Phosphoglycerate kinase 1	4	5230
+P04075	Fructose-bisphosphate aldolase A	4	226
+P07384	Calpain-1 catalytic subunit	4	823
+P0CG05	Ig lambda-2 chain C regions	4	NA
+P18206	Vinculin	4	7414
+P62258	14-3-3 protein epsilon	4	7531
+P68871	Hemoglobin subunit beta	4	3043
+Q9C075	Keratin, type I cytoskeletal 23	4	25984
+A8K2U0	Alpha-2-macroglobulin-like protein 1	3	144568
+P00738	Haptoglobin	3	3240
+P01011	Alpha-1-antichymotrypsin	3	12
+P02763	Alpha-1-acid glycoprotein 1	3	5004
+P18510	Interleukin-1 receptor antagonist protein	3	3557
+P22528	Cornifin-B	3	6699
+P30740	Leukocyte elastase inhibitor	3	1992
+P80188	Neutrophil gelatinase-associated lipocalin	3	3934
+Q15828	Cystatin-M	3	1474
+Q9HCY8	Protein S100-A14	3	57402
+P01623	Ig kappa chain V-III region	3	NA
+P01877	Ig alpha-2 chain C region	3	NA
+P06396	Gelsolin	3	2934
+P14735	Insulin-degrading enzyme	3	3416
+P20933	N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase	3	175
+P25788	Proteasome subunit alpha type-3	3	5684
+P26641	Elongation factor 1-gamma	3	1937
+P36952	Serpin B5	3	5268
+P40926	Malate dehydrogenase, mitochondrial	3	4191
+Q9Y6R7	IgGFc-binding protein	3	8857
+O95274	Ly6/PLAUR domain-containing protein 3	2	27076
+P00491	Purine nucleoside phosphorylase	2	4860
+P04080	Cystatin-B	2	1476
+P09972	Fructose-bisphosphate aldolase C	2	230
+P19012	Keratin, type I cytoskeletal 15	2	3866
+P20930	Filaggrin	2	2312
+Q96FX8	p53 apoptosis effector related to PMP-22	2	64065
+Q9UIV8	Serpin B13	2	5275
+P01625	Ig kappa chain V-IV region Len	2	NA
+P01765	Ig heavy chain V-III region TIL	2	NA
+P01766	Ig heavy chain V-III region BRO	2	NA
+P01860	Ig gamma-3 chain C region	2	NA
+P01871	Ig mu chain C region	2	NA
+P05090	Apolipoprotein D	2	347
+P06870	Kallikrein-1	2	3816
+P07858	Cathepsin B	2	1508
+P08865	40S ribosomal protein SA	2	3921
+P11279	Lysosome-associated membrane glycoprotein 1	2	3916
+P13473	Lysosome-associated membrane glycoprotein 2	2	3920
+P19971	Thymidine phosphorylase	2	1890
+P23284	Peptidyl-prolyl cis-trans isomerase B	2	5479
+P23396	40S ribosomal protein S3	2	6188
+P25705	ATP synthase subunit alpha, mitochondrial	2	498
+P27482	Calmodulin-like protein 3	2	810
+P31949	Protein S100-A11	2	6282
+P40121	Macrophage-capping protein	2	822
+P42357	Histidine ammonia-lyase	2	3034
+P47756	F-actin-capping protein subunit beta	2	832
+P48637	Glutathione synthetase	2	2937
+P49720	Proteasome subunit beta type-3	2	5691
+P50395	Rab GDP dissociation inhibitor beta	2	2665
+P59998	Actin-related protein 2/3 complex subunit 4	2	10093
+P61160	Actin-related protein 2	2	10097
+P61916	Epididymal secretory protein E1	2	10577
+P04745	Alpha-amylase 1	23	278;276;277
+Q9NZT1	Calmodulin-like protein 5	8	51806
+P12273	Prolactin-inducible protein	6	5304
+Q96DA0	Zymogen granule protein 16 homolog B	5	124220
+P01036	Cystatin-S	5	1472
+Q8TAX7	Mucin-7	2	4589
+P01037	Cystatin-SN	2	1469
+P09228	Cystatin-SA	2	1470
+P04264	Keratin, type II cytoskeletal 1	61	3848
+P35908	Keratin, type II cytoskeletal 2 epidermal	40	3849
+P13645	Keratin, type I cytoskeletal 10	40	3858
+Q5D862	Filaggrin-2	14	388698
+Q5T749	Keratinocyte proline-rich protein	13	448834
+Q8IW75	Serpin A12	3	145264
+P81605	Dermcidin	3	117159
+P22531	Small proline-rich protein 2E	3	6704
+P59666	Neutrophil defensin 3	2	1668
+P78386	Keratin, type II cuticular Hb5	2	NA	3891