Mercurial > repos > proteore > proteore_build_protein_interaction_maps
changeset 5:ba96ca3496a2 draft default tip
"planemo upload commit c9a32e920aae2bc186183611bc0abb2040e106f3"
author | proteore |
---|---|
date | Thu, 06 Feb 2020 08:28:04 -0500 |
parents | 4db07f536a32 |
children | |
files | build_protein_interaction_maps.xml |
diffstat | 1 files changed, 9 insertions(+), 8 deletions(-) [+] |
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--- a/build_protein_interaction_maps.xml Fri Jan 24 10:31:01 2020 -0500 +++ b/build_protein_interaction_maps.xml Thu Feb 06 08:28:04 2020 -0500 @@ -1,4 +1,4 @@ -<tool id="build_protein_interaction_maps" name="Build Protein interaction network" version="2020.01.23"> +<tool id="build_protein_interaction_maps" name="Build Protein interaction network" version="2020.02.06"> <description>[BioGRID, BioPlex, HuMAP]</description> <requirements> </requirements> @@ -76,7 +76,7 @@ <param name="id_type" type="select" label="Type/source of IDs" optional="false" > <option value="GeneID" >Entrez gene ID</option> </param> - <param name="ref_file" type="select" label="Species"> + <param name="ref_file" type="select" label="Species and release date"> <options from_data_table="proteore_biogrid_dictionaries"> <filter type="sort_by" column="1"/> </options> @@ -87,7 +87,7 @@ <option value="UniProt-AC" selected="True" >UniProt accession number</option> <option value="GeneID">Entrez gene ID</option> </param> - <param name="ref_file" type="select" label="Species"> + <param name="ref_file" type="select" label="Species and release date"> <options from_data_table="proteore_bioplex_dictionaries"> <filter type="sort_by" column="0"/> </options> @@ -267,17 +267,18 @@ **Data source (release date)** -This tool uses the following public ressources: +This tool uses the following public ressources (for more details please check: http://www.proteore.org/static/data_source.html) - **BioGRID**: -The release 3.5.167 was compiled on Nov. 25rd, 2018 and contains all curated interaction data processed prior to this date. Source files are: +Data were downloaded from BioGrid: https://downloads.thebiogrid.org/BioGRID/ -BIOGRID-ORGANISM-Homo_sapiens-3.5.167.tab2.txt +Installation date: -BIOGRID-ORGANISM-Mus_musculus-3.5.167.tab2.txt +06/02/2020 -BIOGRID-ORGANISM-Rattus_norvegicus-3.5.167.tab2.txt +01/03/2019 + - **Bioplex**: Version 2.0