Mercurial > repos > proteore > proteore_build_protein_interaction_maps

changeset 5:ba96ca3496a2 draft default tip

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"planemo upload commit c9a32e920aae2bc186183611bc0abb2040e106f3"
author proteore
date Thu, 06 Feb 2020 08:28:04 -0500
parents 4db07f536a32
children
files build_protein_interaction_maps.xml
diffstat 1 files changed, 9 insertions(+), 8 deletions(-) [+]
line wrap: on
line diff
--- a/build_protein_interaction_maps.xml	Fri Jan 24 10:31:01 2020 -0500
+++ b/build_protein_interaction_maps.xml	Thu Feb 06 08:28:04 2020 -0500
@@ -1,4 +1,4 @@
-<tool id="build_protein_interaction_maps" name="Build Protein interaction network" version="2020.01.23">
+<tool id="build_protein_interaction_maps" name="Build Protein interaction network" version="2020.02.06">
 <description>[BioGRID, BioPlex, HuMAP]</description>
     <requirements>
     </requirements>
@@ -76,7 +76,7 @@
                 <param name="id_type" type="select" label="Type/source of IDs" optional="false" >
                     <option value="GeneID" >Entrez gene ID</option>
                 </param>
-                <param name="ref_file" type="select" label="Species">
+                <param name="ref_file" type="select" label="Species and release date">
                     <options from_data_table="proteore_biogrid_dictionaries">
                         <filter type="sort_by" column="1"/>
                     </options>
@@ -87,7 +87,7 @@
                     <option value="UniProt-AC" selected="True" >UniProt accession number</option>
                     <option value="GeneID">Entrez gene ID</option>
                 </param>
-                <param name="ref_file" type="select" label="Species">
+                <param name="ref_file" type="select" label="Species and release date">
                     <options from_data_table="proteore_bioplex_dictionaries">
                         <filter type="sort_by" column="0"/>
                     </options>
@@ -267,17 +267,18 @@
 
 **Data source (release date)**
 
-This tool uses the following public ressources:
+This tool uses the following public ressources (for more details please check: http://www.proteore.org/static/data_source.html)
 
 - **BioGRID**:
 
-The release 3.5.167 was compiled on Nov. 25rd, 2018 and contains all curated interaction data processed prior to this date. Source files are: 
+Data were downloaded from BioGrid: https://downloads.thebiogrid.org/BioGRID/
 
-BIOGRID-ORGANISM-Homo_sapiens-3.5.167.tab2.txt
+Installation date: 
 
-BIOGRID-ORGANISM-Mus_musculus-3.5.167.tab2.txt
+06/02/2020
 
-BIOGRID-ORGANISM-Rattus_norvegicus-3.5.167.tab2.txt
+01/03/2019
+
 
 - **Bioplex**: Version 2.0