Mercurial > repos > proteore > proteore_data_manager

comparison data_manager_conf.xml @ 0:9e31ea9fc7ea draft

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planemo upload commit 567ba7934c0ca55529dfeb5e7ca0935ace260ad7-dirty
author proteore
date Wed, 13 Mar 2019 06:30:42 -0400
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children 9ec42cb35abd
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-1:000000000000 0:9e31ea9fc7ea
1 <?xml version="1.0"?>
2 <data_managers>
3 <data_manager tool_file="data_manager/resource_building.xml" id="resource_building">
4 <data_table name="proteore_peptide_atlas">
5 <output>
6 <column name="id"/>
7 <column name="name" />
8 <column name="tissue" />
9 <column name="value" output_ref="output" >
10 <move type="file">
11 <!--source>${path}/${value}.tsv</source-->
12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">peptide_atlas/</target>
13 </move>
14 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/peptide_atlas/${id}.tsv</value_translation>
15 <value_translation type="function">abspath</value_translation>
16 </column>
17 </output>
18 </data_table>
19 <data_table name="proteore_protein_atlas_normal_tissue">
20 <output>
21 <column name="id"/>
22 <column name="name" />
23 <column name="tissue" />
24 <column name="value" output_ref="output" >
25 <move type="file">
26 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">protein_atlas/</target>
27 </move>
28 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/protein_atlas/${id}.tsv</value_translation>
29 <value_translation type="function">abspath</value_translation>
30 </column>
31 </output>
32 </data_table>
33 <data_table name="proteore_protein_atlas_tumor_tissue">
34 <output>
35 <column name="id"/>
36 <column name="name" />
37 <column name="tissue" />
38 <column name="value" output_ref="output" >
39 <move type="file">
40 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">protein_atlas/</target>
41 </move>
42 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/protein_atlas/${id}.tsv</value_translation>
43 <value_translation type="function">abspath</value_translation>
44 </column>
45 </output>
46 </data_table>
47 <data_table name="proteore_id_mapping_Human">
48 <output>
49 <column name="id" />
50 <column name="name" />
51 <column name="species" />
52 <column name="value" output_ref="output" >
53 <move type="file">
54 <!--source>${path}</source-->
55 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">id_mapping/</target>
56 </move>
57 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/id_mapping/${id}.tsv</value_translation>
58 <value_translation type="function">abspath</value_translation>
59 </column>
60 </output>
61 </data_table>
62 <data_table name="proteore_id_mapping_Mouse">
63 <output>
64 <column name="id" />
65 <column name="name" />
66 <column name="species" />
67 <column name="value" output_ref="output" >
68 <move type="file">
69 <!--source>${path}</source-->
70 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">id_mapping/</target>
71 </move>
72 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/id_mapping/${id}.tsv</value_translation>
73 <value_translation type="function">abspath</value_translation>
74 </column>
75 </output>
76 </data_table>
77 <data_table name="proteore_id_mapping_Rat">
78 <output>
79 <column name="id" />
80 <column name="name" />
81 <column name="species" />
82 <column name="value" output_ref="output" >
83 <move type="file">
84 <!--source>${path}</source-->
85 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">id_mapping/</target>
86 </move>
87 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/id_mapping/${id}.tsv</value_translation>
88 <value_translation type="function">abspath</value_translation>
89 </column>
90 </output>
91 </data_table>
92 <data_table name="proteore_biogrid_dictionaries">
93 <output>
94 <column name="id" />
95 <column name="name" />
96 <column name="species" />
97 <column name="value" output_ref="output" >
98 <move type="file">
99 <!--source>${path}</source-->
100 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">PPI_dictionaries/</target>
101 </move>
102 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/PPI_dictionaries/${id}.json</value_translation>
103 <value_translation type="function">abspath</value_translation>
104 </column>
105 </output>
106 </data_table>
107 <data_table name="proteore_bioplex_dictionaries">
108 <output>
109 <column name="id" />
110 <column name="name" />
111 <column name="species" />
112 <column name="value" output_ref="output" >
113 <move type="file">
114 <!--source>${path}</source-->
115 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">PPI_dictionaries/</target>
116 </move>
117 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/PPI_dictionaries/${id}.json</value_translation>
118 <value_translation type="function">abspath</value_translation>
119 </column>
120 </output>
121 </data_table>
122 <data_table name="proteore_humap_dictionaries">
123 <output>
124 <column name="id" />
125 <column name="name" />
126 <column name="species" />
127 <column name="value" output_ref="output" >
128 <move type="file">
129 <!--source>${path}</source-->
130 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">PPI_dictionaries/</target>
131 </move>
132 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/PPI_dictionaries/${id}.json</value_translation>
133 <value_translation type="function">abspath</value_translation>
134 </column>
135 </output>
136 </data_table>
137 <data_table name="proteore_nextprot_ref">
138 <output>
139 <column name="id" />
140 <column name="name" />
141 <column name="value" output_ref="output" >
142 <move type="file">
143 <!--source>${path}</source-->
144 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">proteore_nextprot_ref/</target>
145 </move>
146 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/proteore_nextprot_ref/${id}.tsv</value_translation>
147 <value_translation type="function">abspath</value_translation>
148 </column>
149 </output>
150 </data_table>
151 </data_manager>
152 </data_managers>