Mercurial > repos > proteore > proteore_data_manager
comparison data_manager/resource_building.xml @ 4:e967a99d66b3 draft
"planemo upload commit 540dd383c0617193db43bf11457011888751b022-dirty"
| author | proteore |
|---|---|
| date | Thu, 23 Jan 2020 08:38:02 -0500 |
| parents | af0250fd023c |
| children | b05fa99ddda2 |
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| 3:af0250fd023c | 4:e967a99d66b3 |
|---|---|
| 1 <tool id="data_manager_proteore" name="Get source files for proteore tools" version="2019.09.05" tool_type="manage_data"> | 1 <tool id="data_manager_proteore" name="Get source files for proteore tools" version="2020.01.21" tool_type="manage_data"> |
| 2 <description> | 2 <description> |
| 3 to create or update reference files for proteore tools | 3 to create or update reference files for proteore tools |
| 4 </description> | 4 </description> |
| 5 <requirements> | 5 <requirements> |
| 6 <!--requirement type="package" version="1.8.2">sparqlwrapper</requirement--> | 6 <!--requirement type="package" version="1.8.2">sparqlwrapper</requirement--> |
| 25 #end if | 25 #end if |
| 26 #else if $database.database == "nextprot" | 26 #else if $database.database == "nextprot" |
| 27 --database=$database.database | 27 --database=$database.database |
| 28 #end if | 28 #end if |
| 29 --output "$output" | 29 --output "$output" |
| 30 --tool_data_path=$__tool_data_path__ | |
| 30 | 31 |
| 31 ]]></command> | 32 ]]></command> |
| 32 | 33 |
| 33 <inputs> | 34 <inputs> |
| 34 <conditional name="database"> | 35 <conditional name="database"> |
| 41 </param> | 42 </param> |
| 42 <when value="human_protein_atlas"> | 43 <when value="human_protein_atlas"> |
| 43 <param name="tissues" type="select" multiple="false" label="Please select tissue"> | 44 <param name="tissues" type="select" multiple="false" label="Please select tissue"> |
| 44 <option value="HPA_normal_tissue">Normal tissue</option> | 45 <option value="HPA_normal_tissue">Normal tissue</option> |
| 45 <option value="HPA_pathology">Pathology</option> | 46 <option value="HPA_pathology">Pathology</option> |
| 46 <!--option value="HPA_full_atlas">Full Atlas</option--> | 47 <option value="HPA_full_atlas">Full Atlas</option> |
| 47 </param> | 48 </param> |
| 48 </when> | 49 </when> |
| 49 <when value="peptide_atlas"> | 50 <when value="peptide_atlas"> |
| 50 <param name="tissues" type="select" multiple="false" label="Please select the tissue"> | 51 <param name="tissues" type="select" multiple="false" label="Please select the tissue"> |
| 51 <option value="432.Human_Adrenal_gland">Human Adrenal gland proteome</option> | 52 <option value="432.Human_Adrenal_gland">Human Adrenal gland proteome</option> |