Mercurial > repos > proteore > proteore_data_manager
diff data_manager_conf.xml @ 0:9e31ea9fc7ea draft
planemo upload commit 567ba7934c0ca55529dfeb5e7ca0935ace260ad7-dirty
| author | proteore |
|---|---|
| date | Wed, 13 Mar 2019 06:30:42 -0400 |
| parents | |
| children | 9ec42cb35abd |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/data_manager_conf.xml Wed Mar 13 06:30:42 2019 -0400 @@ -0,0 +1,152 @@ +<?xml version="1.0"?> +<data_managers> + <data_manager tool_file="data_manager/resource_building.xml" id="resource_building"> + <data_table name="proteore_peptide_atlas"> + <output> + <column name="id"/> + <column name="name" /> + <column name="tissue" /> + <column name="value" output_ref="output" > + <move type="file"> + <!--source>${path}/${value}.tsv</source--> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">peptide_atlas/</target> + </move> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/peptide_atlas/${id}.tsv</value_translation> + <value_translation type="function">abspath</value_translation> + </column> + </output> + </data_table> + <data_table name="proteore_protein_atlas_normal_tissue"> + <output> + <column name="id"/> + <column name="name" /> + <column name="tissue" /> + <column name="value" output_ref="output" > + <move type="file"> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">protein_atlas/</target> + </move> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/protein_atlas/${id}.tsv</value_translation> + <value_translation type="function">abspath</value_translation> + </column> + </output> + </data_table> + <data_table name="proteore_protein_atlas_tumor_tissue"> + <output> + <column name="id"/> + <column name="name" /> + <column name="tissue" /> + <column name="value" output_ref="output" > + <move type="file"> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">protein_atlas/</target> + </move> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/protein_atlas/${id}.tsv</value_translation> + <value_translation type="function">abspath</value_translation> + </column> + </output> + </data_table> + <data_table name="proteore_id_mapping_Human"> + <output> + <column name="id" /> + <column name="name" /> + <column name="species" /> + <column name="value" output_ref="output" > + <move type="file"> + <!--source>${path}</source--> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">id_mapping/</target> + </move> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/id_mapping/${id}.tsv</value_translation> + <value_translation type="function">abspath</value_translation> + </column> + </output> + </data_table> + <data_table name="proteore_id_mapping_Mouse"> + <output> + <column name="id" /> + <column name="name" /> + <column name="species" /> + <column name="value" output_ref="output" > + <move type="file"> + <!--source>${path}</source--> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">id_mapping/</target> + </move> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/id_mapping/${id}.tsv</value_translation> + <value_translation type="function">abspath</value_translation> + </column> + </output> + </data_table> + <data_table name="proteore_id_mapping_Rat"> + <output> + <column name="id" /> + <column name="name" /> + <column name="species" /> + <column name="value" output_ref="output" > + <move type="file"> + <!--source>${path}</source--> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">id_mapping/</target> + </move> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/id_mapping/${id}.tsv</value_translation> + <value_translation type="function">abspath</value_translation> + </column> + </output> + </data_table> + <data_table name="proteore_biogrid_dictionaries"> + <output> + <column name="id" /> + <column name="name" /> + <column name="species" /> + <column name="value" output_ref="output" > + <move type="file"> + <!--source>${path}</source--> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">PPI_dictionaries/</target> + </move> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/PPI_dictionaries/${id}.json</value_translation> + <value_translation type="function">abspath</value_translation> + </column> + </output> + </data_table> + <data_table name="proteore_bioplex_dictionaries"> + <output> + <column name="id" /> + <column name="name" /> + <column name="species" /> + <column name="value" output_ref="output" > + <move type="file"> + <!--source>${path}</source--> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">PPI_dictionaries/</target> + </move> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/PPI_dictionaries/${id}.json</value_translation> + <value_translation type="function">abspath</value_translation> + </column> + </output> + </data_table> + <data_table name="proteore_humap_dictionaries"> + <output> + <column name="id" /> + <column name="name" /> + <column name="species" /> + <column name="value" output_ref="output" > + <move type="file"> + <!--source>${path}</source--> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">PPI_dictionaries/</target> + </move> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/PPI_dictionaries/${id}.json</value_translation> + <value_translation type="function">abspath</value_translation> + </column> + </output> + </data_table> + <data_table name="proteore_nextprot_ref"> + <output> + <column name="id" /> + <column name="name" /> + <column name="value" output_ref="output" > + <move type="file"> + <!--source>${path}</source--> + <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">proteore_nextprot_ref/</target> + </move> + <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/proteore_nextprot_ref/${id}.tsv</value_translation> + <value_translation type="function">abspath</value_translation> + </column> + </output> + </data_table> + </data_manager> +</data_managers>