Mercurial > repos > proteore > proteore_expression_rnaseq_abbased

comparison README.rst @ 4:2f95774977ff draft

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author proteore
date Wed, 14 Mar 2018 11:27:05 -0400
parents f128f2ede8fb
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19 Input can be either a list of Ensembl gene ids (copy/paste) or a file containing multiple fields but with **at least one column of Ensembl gene IDs**. If your input file contains other type of IDs, please use the ID_Converter tool to create a column of Ensembl gene IDs. 19 Input can be either a list of Ensembl gene ids (copy/paste) or a file containing multiple fields but with **at least one column of Ensembl gene IDs**. If your input file contains other type of IDs, please use the ID_Converter tool to create a column of Ensembl gene IDs.
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21 **Databases** 21 **Databases**
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23 HPA source file: http://www.proteinatlas.org/download/proteinatlas.tab.gz 23 HPA source file (Human Protein Atlas version 18): http://www.proteinatlas.org/download/proteinatlas.tab.gz
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25 **Annotation** 25 **Annotation**
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27 - Gene name: according to the HGNC (Hugo Gene Nomenclature Committee) 27 - Gene name: according to the HGNC (Hugo Gene Nomenclature Committee)
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45 - RNA non-specific tissue abundance in 'Transcript Per Million': please refer to http://www.proteinatlas.org/about/assays+annotation#rna. 45 - RNA non-specific tissue abundance in 'Transcript Per Million': please refer to http://www.proteinatlas.org/about/assays+annotation#rna.
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47 **Outputs** 47 **Outputs**
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49 The output is a tabular file. The initial columns are kept and new columns are added according to what type of annotation data you chose. 49 The output is a tabular file. The initial columns are kept and new columns are added according to what type of annotation data you chose.