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author proteore
date Tue, 18 Dec 2018 08:23:48 -0500
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1 Wrapper for Add expression data to your protein list Tool 1 Wrapper for Add expression data to your protein list Tool
2 ========================================================= 2 =========================================================
3 **Authors** 3 **Authors**
4 4
5 Lisa Peru, T.P. Lien Nguyen, Florence Combes, Yves Vandenbrouck CEA, INSERM, CNRS, Grenoble-Alpes University, BIG Institute, FR 5 Lisa Perus, T.P. Lien Nguyen, Florence Combes, Yves Vandenbrouck CEA, INSERM, CNRS, Grenoble-Alpes University, BIG Institute, FR
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7 Sandra Dérozier, Olivier Rué, Christophe Caron, Valentin Loux INRA, Paris-Saclay University, MAIAGE Unit, Migale Bioinformatics platform 7 Sandra Dérozier, Olivier Rué, Christophe Caron, Valentin Loux INRA, Paris-Saclay University, MAIAGE Unit, Migale Bioinformatics platform
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9 This work has been partially funded through the French National Agency for Research (ANR) IFB project. 9 This work has been partially funded through the French National Agency for Research (ANR) IFB project.
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19 Input can be either a list of Ensembl gene ids (copy/paste) or a file containing multiple fields but with **at least one column of Ensembl gene IDs**. If your input file contains other type of IDs, please use the ID_Converter tool to create a column of Ensembl gene IDs. 19 Input can be either a list of Ensembl gene ids (copy/paste) or a file containing multiple fields but with **at least one column of Ensembl gene IDs**. If your input file contains other type of IDs, please use the ID_Converter tool to create a column of Ensembl gene IDs.
20 20
21 **Databases** 21 **Databases**
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23 HPA source file (Human Protein Atlas version 18): http://www.proteinatlas.org/download/proteinatlas.tab.gz 23 HPA source file: http://www.proteinatlas.org/download/proteinatlas.tab.gz
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25 **Annotation** 25 **Annotation**
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27 - Gene name: according to the HGNC (Hugo Gene Nomenclature Committee) 27 - Gene name: according to the HGNC (Hugo Gene Nomenclature Committee)
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45 - RNA non-specific tissue abundance in 'Transcript Per Million': please refer to http://www.proteinatlas.org/about/assays+annotation#rna. 45 - RNA non-specific tissue abundance in 'Transcript Per Million': please refer to http://www.proteinatlas.org/about/assays+annotation#rna.
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47 **Outputs** 47 **Outputs**
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49 The output is a tabular file. The initial columns are kept and new columns are added according to what type of annotation data you chose. 49 The output is a tabular file. The initial columns are kept and new columns are added according to what type of annotation data you chose.