diff add_expression_data.xml @ 11:e109cacd75b2 draft

planemo upload commit f91a292f92a3e75996e6f4502fa090961727c235-dirty

--- a/add_expression_data.xml	Tue Dec 18 11:14:03 2018 -0500
+++ b/add_expression_data.xml	Wed Jan 02 04:40:04 2019 -0500
@@ -1,4 +1,4 @@
-<tool id="rna_abbased_data" name="Add expression data" version="2018.12.18">
+<tool id="rna_abbased_data" name="Add expression data" version="2019.01.02">
 <description> (RNAseq or Immuno-assays)[Human Protein Atlas]
 </description>
 <requirements>
@@ -56,7 +56,7 @@
           <option value="Evidence">Evidence (at protein level, at transcript level or no evidence)</option>
           <option value="Antibody">Antibody reference</option>
           <option value="RNA tissue category">RNA tissue category</option>
- 		  <option value="Reliability (IH)">IH detection level</option>
+ 		      <option value="Reliability (IH)">IH detection level</option>
           <option value="Reliability (IF)">IF detection level</option>
           <option value="Subcellular location">Subcellular location</option>
           <option value="RNA TS TPM">RNA tissue specificity abundance in 'Transcript Per Million'</option>
@@ -77,10 +77,10 @@
       <param name="filetype " value="file_all"/>
       <param name="genelist" value="ID_Converter_Lacombe_et_al_2017_OK.txt"/>
       <param name="column" value="c8"/>
-      <param name="header" value="TRUE"/>
+      <param name="header" value="true"/>
     </conditional>
     <section name="options">
-      <param name="hpaparams" value="Gene,Gene.description,Evidence,Antibody,RNA.tissue.category,Reliability.IH,Reliability.IF,Subcellular.location,RNA.TS.TPM,TPM.max.in.non.specific"/>
+      <param name="hpaparams" value="Gene,Gene description,Evidence,Antibody,RNA tissue category,Reliability (IH),Reliability (IF),Subcellular location,RNA TS TPM,TPM max in non-specific"/>
     </section>
     <output name="output" file="Get_annotation_RNAseq.txt"/>
   </test>