Mercurial > repos > proteore > proteore_expression_rnaseq_abbased
changeset 15:208b87582b4c draft default tip
"planemo upload commit 9a871575622a1318adc64dad63fa5e3a9d2a19fd"
| author | proteore |
|---|---|
| date | Wed, 29 Apr 2020 08:51:13 -0400 |
| parents | 133309fd6875 |
| children | |
| files | add_expression_HPA.R add_expression_data.xml |
| diffstat | 2 files changed, 4 insertions(+), 4 deletions(-) [+] |
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--- a/add_expression_HPA.R Fri Jan 24 04:22:48 2020 -0500 +++ b/add_expression_HPA.R Wed Apr 29 08:51:13 2020 -0400 @@ -147,8 +147,8 @@ } convert_to_previous_header <- function(options){ - header = c('Gene','description','Evidence','Antibody','RNA tissue specificity','Reliability (IH)','Reliability (IF)','Subcellular location','RNA tissue specific NX','TPM max in non-specific') - names(header) = c('Gene','description','Evidence','Antibody','RNA tissue category','Reliability (IH)','Reliability (IF)','Subcellular location','RNA TS TPM','TPM max in non-specific') + header = c('Gene','Gene description','Evidence','Antibody','RNA tissue specificity','Reliability (IH)','Reliability (IF)','Subcellular location','RNA tissue specific NX','TPM max in non-specific') + names(header) = c('Gene','Gene description','Evidence','Antibody','RNA tissue category','Reliability (IH)','Reliability (IF)','Subcellular location','RNA TS TPM','TPM max in non-specific') options = names(header[which(header %in% options)]) return(options) }
--- a/add_expression_data.xml Fri Jan 24 04:22:48 2020 -0500 +++ b/add_expression_data.xml Wed Apr 29 08:51:13 2020 -0400 @@ -1,8 +1,8 @@ -<tool id="rna_abbased_data" name="Add expression data" version="2020.01.24"> +<tool id="rna_abbased_data" name="Add expression data" version="2020.04.06"> <description> (RNAseq or Immuno-assays)[Human Protein Atlas] </description> <requirements> - <requirement type="package" version="3.4.4">R</requirement> + <requirement type="package" version="3.6.1">r-base</requirement> </requirements> <stdio> <exit_code range="1:" />