# HG changeset patch
# User proteore
# Date 1561712960 14400
# Node ID 5621406a4d2fcb01a408a30670ebef20dfca1911
# Parent  b4641c0f8a82414f2263e728f22f57086d5a9ef8
planemo upload commit 4ba1ebe7b3f5e3fabf78b5fed7ed0b92e2cbf9e5-dirty

diff -r b4641c0f8a82 -r 5621406a4d2f filter_kw_val.xml
--- a/filter_kw_val.xml	Mon Mar 11 09:14:42 2019 -0400
+++ b/filter_kw_val.xml	Fri Jun 28 05:09:20 2019 -0400
@@ -1,4 +1,4 @@
-<tool id="MQoutputfilter" name="Filter by keywords and/or numerical value" version="2019.03.11">
+<tool id="MQoutputfilter" name="Filter by keywords and/or numerical value" version="2019.06.27">
     <description></description>
     <requirements>
     </requirements>
@@ -59,7 +59,7 @@
             <param name="ncol" type="text" value="c1" label="Column number on which to apply the filter" help='For example, fill in "c1" if you want to seek keywords in the first column (and keep or discard them)'>
                 <validator type="regex" message="Please enter a column number, for example: 'c1' for the first column">[c]{0,1}[0-9]+</validator>
             </param>
-            <param type="boolean" name="match" truevalue="True" label="Search for exact match?" help='Choosing "Yes" will only filter out exact match (e.g. case sensitive), see help section' />
+            <param type="boolean" name="match" truevalue="True" label="Search for exact match?" help='Choosing "Yes" will only filter out exact match, see help section' />
             <conditional name="k" >
                 <param name="kw" type="select" label="Enter keywords" >
                     <option value="text" selected="true">copy/paste</option>
@@ -118,8 +118,8 @@
         </conditional>
     </inputs>    
     <outputs>
+        <data name="discarded_lines" format="tsv" label="Filtered_${input1.name} - discarded_lines" />
         <data name="kept_lines" format="tsv" label="Filtered_${input1.name}" />
-        <data name="discarded_lines" format="tsv" label="Filtered_${input1.name} - discarded_lines" />
     </outputs>
     <tests>
         <test>
@@ -199,7 +199,7 @@
 
 LYSO_ECOLI
 
-Lines that contains these keywords will be removed from input file.
+Lines that contains these keywords will be either removed (if "Discard" selected) or retained (if "Keep" selected) from input file.
 
 "Search for exact match?": Keywords search can be applied by performing either exact match or partial one by using the following option:
 
@@ -207,12 +207,15 @@
 
 - If you choose **No**, all the fields containing the keyword will be removed.
 
+For both options, the filter is case insensitive (uppercase and lowercase are treated equally)
+
 Example:
 
 **Yes** option (exact match) selected using the keyword "kinase": only lines which contain exactly the word "kinase" will be removed.
 
 **No** option (partial match) for "kinase": lines which contain "kinase" and lines with "alpha-kinase" (and so on) will be removed.
 
+
 -----
 
 **Filter by numerical values**: You can filter your data by a column of numerical values. 
@@ -257,13 +260,13 @@
 
 **Authors**
 
-David Christiany, T.P. Lien Nguyen, Florence Combes, Yves Vandenbrouck - CEA, INSERM, CNRS, Grenoble-Alpes University, BIG Institute, FR
+David Christiany, Lien Nguyen, Florence Combes, Yves Vandenbrouck - CEA, INSERM, CNRS, Grenoble-Alpes University, BIG Institute, FR
 
 Sandra Dérozier, Olivier Rué, Christophe Caron, Valentin Loux - INRA, Paris-Saclay University, MAIAGE Unit, Migale Bioinformatics platform, FR
 
 This work has been partially funded through the French National Agency for Research (ANR) IFB project.
 
-Contact support@proteore.org for any questions or concerns about the Galaxy implementation of this tool.
+Help: contact@proteore.org for any questions or concerns about this tool.
 
     ]]></help>
     <citations>