Mercurial > repos > proteore > proteore_goprofiles

diff goprofiles.xml @ 15:601027649251 draft default tip

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"planemo upload commit 6bc2c32177acd823d5025bc90a562e6e6b2a233a"
author proteore
date Tue, 06 Apr 2021 16:59:30 +0000
parents 45b4ede6940e
children
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--- a/goprofiles.xml	Fri Jan 24 05:10:14 2020 -0500
+++ b/goprofiles.xml	Tue Apr 06 16:59:30 2021 +0000
@@ -1,14 +1,13 @@
-<tool id="goProfiles" name="Compute functional profiles" version="2020.01.23">
+<tool id="goProfiles" name="Compute functional profiles" version="2021.04.03">
     <description>(Human, Mouse) [goProfiles]</description>
     <requirements>
-        <requirement type="package" >R</requirement>
-        <requirement type="package" version="3.8.2">bioconductor-org.hs.eg.db</requirement>
-        <requirement type="package" version="3.8.2">bioconductor-org.mm.eg.db</requirement>
-        <!--requirement type="package" version="3.5.0">bioconductor-org.rn.eg.db</requirement-->
-        <requirement type="package" version="1.46.0">bioconductor-annotationdbi</requirement>
-        <requirement type="package" version="2.44.0">bioconductor-biobase</requirement>
-        <requirement type="package" version="1.46.0">bioconductor-goprofiles</requirement>
-
+        <requirement type="package" version="4.0.3">r-base</requirement>
+        <requirement type="package" version="3.12.0">bioconductor-org.hs.eg.db</requirement>
+        <requirement type="package" version="3.12.0">bioconductor-org.mm.eg.db</requirement>
+        <requirement type="package" version="1.52.0">bioconductor-annotationdbi</requirement>
+        <requirement type="package" version="2.50.0">bioconductor-biobase</requirement>
+        <requirement type="package" version="3.12.1">bioconductor-go.db</requirement>
+        <requirement type="package" version="1.52.0">bioconductor-goprofiles</requirement>
     </requirements>
     <stdio>
         <exit_code range="1:" />
@@ -135,9 +134,9 @@
             <param name="title" value="Test" />
             <param name="plot_opt" value="PDF" />
             <output_collection name="output" type="list" >
-                <element name="profile.BP.pdf" file="profile.BP.pdf" ftype="pdf" compare="sim_size"/>
-                <element name="profile.CC.pdf" file="profile.CC.pdf" ftype="pdf" compare="sim_size"/>
-                <element name="profile.MF.pdf" file="profile.MF.pdf" ftype="pdf" compare="sim_size"/>
+                <element name="profile_BP.pdf" file="profile.BP.pdf" ftype="pdf" compare="sim_size"/>
+                <element name="profile_CC.pdf" file="profile.CC.pdf" ftype="pdf" compare="sim_size"/>
+                <element name="profile_MF.pdf" file="profile.MF.pdf" ftype="pdf" compare="sim_size"/>
             </output_collection>
             <output name="log" file="GO_Profile_text_output.tsv"/>
         </test>
@@ -183,11 +182,12 @@
 .. class:: infomark
 
 Packages used:
-    - bioconductor-org.hs.eg.db v3.5.0
-    - bioconductor-org.mm.eg.db v3.5.0
-    - bioconductor-annotationdbi v1.40.0
-    - bioconductor-biobase v2.98.0
-    - goprofiles v1.38.0
+    - bioconductor-org.hs.eg.db v3.12.0
+    - bioconductor-org.mm.eg.db v3.12.0
+    - bioconductor-annotationdbi v1.52.0
+    - bioconductor-biobase v2.50.0
+    - bioconductor-go.db v3.12.1
+    - goprofiles v1.52.0
 
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