comparison id_converter.xml @ 5:0584344186eb draft

planemo upload commit 6e27a0eaf8172154128960497271e8f54341acd7-dirty

4:134949593a3b

    <stdio>
        <exit_code range="1:" />
    </stdio>
    <command interpreter="Rscript">
        $__tool_directory__/id_converter_UniProt.R
        "$idti.idtypein"
        #if $input.ids == "text"
            "$input.txt"
            "list"
        #else
            "$input.file,$input.ncol,$input.header"
            "file"
        #end if
        "$idto.idtypeout"
        "$output"
        $__tool_directory__/tool-data/human_id_mapping_file.txt
        
    </command>
    <inputs>
        <conditional name="input" >
            <param name="ids" type="select" label="Provide your identifiers" help="Copy/paste or ID list from a file (e.g. table)" >

5:0584344186eb

    <stdio>
        <exit_code range="1:" />
    </stdio>
    <command interpreter="Rscript">
        $__tool_directory__/id_converter_UniProt.R
        --id_type="$idti.idtypein"
        #if $input.ids == "text"
            --input="$input.txt"
            --input_type="list"
        #else
            --input="$input.file"
            --column_number="$input.ncol"
            --header="$input.header"
            --input_type="file"
        #end if
        --target_ids="$idto.idtypeout"
        --output="$output"
        --ref_file="$__tool_directory__/tool-data/human_id_mapping_file.txt"
        
    </command>
    <inputs>
        <conditional name="input" >
            <param name="ids" type="select" label="Provide your identifiers" help="Copy/paste or ID list from a file (e.g. table)" >