Mercurial > repos > proteore > proteore_id_converter
comparison id_converter.xml @ 1:3b654cb3f6ad draft
planemo upload commit 74f72978b11230744b116d34fe3f2aa7934bf545-dirty
| author | proteore |
|---|---|
| date | Tue, 27 Feb 2018 08:42:18 -0500 |
| parents | f2d0b13d9615 |
| children | 9b3a4ee0dcc6 |
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| 0:f2d0b13d9615 | 1:3b654cb3f6ad |
|---|---|
| 1 <tool id="IDconverter" name="ID Converter" version="0.1.0"> | 1 <tool id="IDconverter" name="ID Converter" version="0.1.0"> |
| 2 <description>convert public database identifiers (Homo sapiens only for now) | 2 <description>convert public database identifiers (Homo sapiens only for now) |
| 3 </description> | 3 </description> |
| 4 <requirements> | 4 <requirements> |
| 5 <requirement type="package" version="3.4.1">R</requirement> | |
| 5 </requirements> | 6 </requirements> |
| 6 <stdio> | 7 <stdio> |
| 7 <exit_code range="1:" /> | 8 <exit_code range="1:" /> |
| 8 </stdio> | 9 </stdio> |
| 9 <command interpreter="Rscript"> | 10 <command interpreter="Rscript"> |
| 10 id_converter_UniProt.R | 11 $__tool_directory__/id_converter_UniProt.R |
| 11 "$idti.idtypein" | 12 "$idti.idtypein" |
| 12 #if $input.ids == "text" | 13 #if $input.ids == "text" |
| 13 "$input.txt" | 14 "$input.txt" |
| 14 "list" | 15 "list" |
| 15 #else | 16 #else |
| 16 "$input.file,$input.ncol,$input.header" | 17 "$input.file,$input.ncol,$input.header" |
| 17 "file" | 18 "file" |
| 18 #end if | 19 #end if |
| 19 "$idto.idtypeout" | 20 "$idto.idtypeout" |
| 20 "$output" | 21 "$output" |
| 21 $__tool_directory__/../../utils/human_id_mapping_file.txt | 22 $__tool_directory__/tool-data/human_id_mapping_file.txt |
| 22 | 23 |
| 23 </command> | 24 </command> |
| 24 <inputs> | 25 <inputs> |
| 25 <conditional name="input" > | 26 <conditional name="input" > |
| 26 <param name="ids" type="select" label="Provide your identifiers" help="Copy/paste or ID list from a file (e.g. table)" > | 27 <param name="ids" type="select" label="Provide your identifiers" help="Copy/paste or ID list from a file (e.g. table)" > |