Mercurial > repos > proteore > proteore_id_converter
comparison README.rst @ 18:5252bbcfbdd7 draft
planemo upload commit dc6d9d8f1808c4c6bcc42ac6861a8b811e4cee58-dirty
| author | proteore |
|---|---|
| date | Fri, 10 May 2019 10:38:46 -0400 |
| parents | b50d913ec067 |
| children | 9d758344d36e |
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| 17:1e45ea50f145 | 18:5252bbcfbdd7 |
|---|---|
| 23 | 23 |
| 24 **Available databases** | 24 **Available databases** |
| 25 | 25 |
| 26 * neXtProt ID (e.g. NX_P31946) | 26 * neXtProt ID (e.g. NX_P31946) |
| 27 | 27 |
| 28 * Uniprot accession number (e.g. P31946) | 28 * UniProt accession number (e.g. P31946 - reviewed entries only) |
| 29 | |
| 30 * UniProt accession number (e.g. P31946 - reviewed and unreviewed entries) | |
| 29 | 31 |
| 30 * Uniprot ID (e.g 1433B_HUMAN) | 32 * Uniprot ID (e.g 1433B_HUMAN) |
| 31 | 33 |
| 32 * Entrez gene ID (e.g. 7529) | 34 * Entrez gene ID (e.g. 7529) |
| 33 | 35 |
| 67 Tarball downloaded from ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/ | 69 Tarball downloaded from ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/ |
| 68 | 70 |
| 69 * HUMAN_9606_idmapping.dat (Uniprot 23/10/18) | 71 * HUMAN_9606_idmapping.dat (Uniprot 23/10/18) |
| 70 Tarball downloaded from ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/ | 72 Tarball downloaded from ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/ |
| 71 | 73 |
| 74 * Human uniprot-AC entries reviewed : https://www.uniprot.org/uniprot/?query=reviewed:yes+AND+organism:9606&format=list | |
| 75 | |
| 76 | |
| 72 * nextprot_ac_list_all.txt (Nextprot released on 10/10/2018) | 77 * nextprot_ac_list_all.txt (Nextprot released on 10/10/2018) |
| 73 Downloaded from ftp://ftp.nextprot.org/pub/current_release/ac_lists/ | 78 Downloaded from ftp://ftp.nextprot.org/pub/current_release/ac_lists/ |
| 74 | 79 |
| 75 * MOUSE_10090_idmapping_selected.tab (Uniprot 23/10/2018) | 80 * MOUSE_10090_idmapping_selected.tab (Uniprot 23/10/2018) |
| 76 Tarball downloaded from ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/ | 81 Tarball downloaded from ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/ |
| 77 | 82 |
| 78 * MOUSE_10090_idmapping.dat (Uniprot 23/10/18) | 83 * MOUSE_10090_idmapping.dat (Uniprot 23/10/18) |
| 79 Tarball downloaded from ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/ | 84 Tarball downloaded from ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/ |
| 80 | 85 |
| 86 * Mouse uniprot-AC entries reviewed : https://www.uniprot.org/uniprot/?query=reviewed:yes+AND+organism:10090&format=list | |
| 87 | |
| 88 | |
| 81 * RAT_10116_idmapping.dat (Uniprot 23/10/18) | 89 * RAT_10116_idmapping.dat (Uniprot 23/10/18) |
| 82 Tarball downloaded from ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/ | 90 Tarball downloaded from ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/ |
| 83 | 91 |
| 84 * RAT_10116_idmapping_selected.tab (Uniprot 23/10/18) | 92 * RAT_10116_idmapping_selected.tab (Uniprot 23/10/18) |
| 85 Tarball downloaded from ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/ | 93 Tarball downloaded from ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/ |
| 94 | |
| 95 * Rat uniprot-AC entries reviewed : https://www.uniprot.org/uniprot/?query=reviewed:yes+AND+organism:10116&format=list |