comparison id_converter.xml @ 20:77a2cd4162b7 draft

planemo upload commit 4ba1ebe7b3f5e3fabf78b5fed7ed0b92e2cbf9e5-dirty

19:9d758344d36e

<tool id="IDconverter" name="ID Converter" version="2019.06.18">
    <description>(Human, Mouse, Rat)
    </description>
    <requirements>
    </requirements>
    <stdio>

            <output name="output" value="ID_Converted_FKW_Lacombe_et_al_2017_OK.txt" />
        </test>
    </tests>
    <help><![CDATA[
**Description**
This tool converts a list of identifiers (IDs) into another type of ID. Currently the conversion of IDs applies to the following three species: Human (homo sapiens, Mouse (Mus musculus), Rat (Rattus norvegicus). 
Supported source and target type of IDs are listed below. After choosing the type of your input IDs, you can select one or more types of ID you may need. 

-----

In copy/paste mode, the number of IDs considered in input is limited to 5000.

-----

**Parameters**
Target type of IDs currently supported:   

* neXtProt ID (e.g. NX_P31946)

* UniProt accession number (e.g. P31946 - reviewed entries only)

Nextprot and OMIM only applicable to Human species.

.. class:: warningmark

For Uniprot-AC and uniprot-ID, only reviewed IDs are considered here, except for releases before 08-05-2019 where all uniprot-AC and uniprot-ID (at the time) are considered.

-----

**Output**

A text file containing the selected type of IDs (in addition to the original column(s) provided)
Please, note that a "NA" is returned when there is no match between a source ID and the corresponding target ID.

-----

**Data sources (release date)**

.. class:: infomark

**Authors**

David Christiany, T.P. Lien Nguyen, Florence Combes, Yves Vandenbrouck CEA, INSERM, CNRS, Grenoble-Alpes University, BIG Institute, FR

Sandra Dérozier, Olivier Rué, Christophe Caron, Valentin Loux INRA, Paris-Saclay University, MAIAGE Unit, Migale Bioinformatics platform, FR

This work has been partially funded through the French National Agency for Research (ANR) IFB project.

Contact [e-mail] for any questions or concerns about the Galaxy implementation of this tool.
 
    ]]></help>
    <citations>
    </citations>
</tool>

20:77a2cd4162b7

<tool id="IDconverter" name="ID Converter" version="2019.06.27">
    <description>(Human, Mouse, Rat)
    </description>
    <requirements>
    </requirements>
    <stdio>

            <output name="output" value="ID_Converted_FKW_Lacombe_et_al_2017_OK.txt" />
        </test>
    </tests>
    <help><![CDATA[
**Description**

This tool converts a list of identifiers (IDs) into another type of ID. Currently the conversion of IDs applies to the following three species: Human (homo sapiens, Mouse (Mus musculus), Rat (Rattus norvegicus). 
Supported source and target type of IDs are listed below. After choosing the type of your input IDs, you can select one or more types of ID you may need. 

-----

In copy/paste mode, the number of IDs considered in input is limited to 5000.

-----

**Parameters**

Target type of IDs currently supported:   

* neXtProt ID (e.g. NX_P31946)

* UniProt accession number (e.g. P31946 - reviewed entries only)

Nextprot and OMIM only applicable to Human species.

.. class:: warningmark

For Uniprot-AC and uniprot-ID, only reviewed IDs are considered here, except for release before 08-05-2019 where all uniprot-AC and uniprot-ID (at the time) are considered.

-----

**Output**

A text file containing the selected type of IDs (in addition to the original column(s) provided).
Please, note that a "NA" is returned when there is no match between a source ID and the corresponding target ID.

-----

**Data sources (release date)**

.. class:: infomark

**Authors**

David Christiany, Lien Nguyen, Florence Combes, Yves Vandenbrouck CEA, INSERM, CNRS, Grenoble-Alpes University, BIG Institute, FR

Sandra Dérozier, Olivier Rué, Christophe Caron, Valentin Loux INRA, Paris-Saclay University, MAIAGE Unit, Migale Bioinformatics platform, FR

This work has been partially funded through the French National Agency for Research (ANR) IFB project.

Help: [e-mail] for any questions or concerns about this tool.
 
    ]]></help>
    <citations>
    </citations>
</tool>