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comparison id_converter.xml @ 19:9d758344d36e draft

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planemo upload commit 339ab77a83db03409c8001324f10b36ff5b13a39-dirty
author proteore
date Wed, 19 Jun 2019 04:38:12 -0400
parents 5252bbcfbdd7
children 77a2cd4162b7
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18:5252bbcfbdd7 19:9d758344d36e
1 <tool id="IDconverter" name="ID Converter" version="2019.05.10"> 1 <tool id="IDconverter" name="ID Converter" version="2019.06.18">
2 <description>(Human, Mouse, Rat) 2 <description>(Human, Mouse, Rat)
3 </description> 3 </description>
4 <requirements> 4 <requirements>
5 </requirements> 5 </requirements>
6 <stdio> 6 <stdio>
57 </when> 57 </when>
58 </conditional> 58 </conditional>
59 <conditional name="species"> 59 <conditional name="species">
60 <param name="species" type="select" label="Species"> 60 <param name="species" type="select" label="Species">
61 <option value="Human" selected="True">Human (Homo sapiens)</option> 61 <option value="Human" selected="True">Human (Homo sapiens)</option>
62 <option value="Mouse" selected="True">Mouse (Mus musculus)</option> 62 <option value="Mouse">Mouse (Mus musculus)</option>
63 <option value="Rat" selected="True">Rat (Rattus norvegicus)</option> 63 <option value="Rat">Rat (Rattus norvegicus)</option>
64 </param> 64 </param>
65 <when value="Human"> 65 <when value="Human">
66 <param name="mapping_file" type="select" label="Release" > 66 <param name="mapping_file" type="select" label="Release" >
67 <options from_data_table="proteore_id_mapping_Human"> 67 <options from_data_table="proteore_id_mapping_Human">
68 <filter type="sort_by" column="0"/> 68 <filter type="sort_by" column="0"/>
88 <option value="KEGG" >KEGG gene id (e.g. hsa:7529)</option> 88 <option value="KEGG" >KEGG gene id (e.g. hsa:7529)</option>
89 </param> 89 </param>
90 <section name="idto" title="Target type" expanded="True" > 90 <section name="idto" title="Target type" expanded="True" >
91 <param name="idtypeout" type="select" label="Target type of IDs you would like to map to" display="checkboxes" multiple="True" optional="false" > 91 <param name="idtypeout" type="select" label="Target type of IDs you would like to map to" display="checkboxes" multiple="True" optional="false" >
92 <option value="neXtProt" >neXtProt ID (e.g. NX_P31946)</option> 92 <option value="neXtProt" >neXtProt ID (e.g. NX_P31946)</option>
93 <option value="UniProt-AC_reviewed" >UniProt accession number (e.g. P31946 - reviewed entries only)</option> 93 <option value="UniProt-AC" >UniProt accession number (e.g. P31946 - reviewed entries only)</option>
94 <option value="UniProt-AC" >UniProt accession number (e.g. P31946 - reviewed and unreviewed entries)</option> 94 <!--option value="UniProt-AC" >UniProt accession number (e.g. P31946 - reviewed and unreviewed entries)</option-->
95 <option value="UniProt-ID" >UniProt ID (e.g 1433B_HUMAN)</option> 95 <option value="UniProt-ID" >UniProt ID (e.g 1433B_HUMAN)</option>
96 <option value="GeneID" >Entrez gene ID (e.g. 7529)</option> 96 <option value="GeneID" >Entrez gene ID (e.g. 7529)</option>
97 <option value="RefSeq" >RefSeq (NCBI) protein (e.g. NP_003395.1)</option> 97 <option value="RefSeq" >RefSeq (NCBI) protein (e.g. NP_003395.1)</option>
98 <option value="GI" >GI (NCBI GI number) (e.g. 21328448)</option> 98 <option value="GI" >GI (NCBI GI number) (e.g. 21328448)</option>
99 <option value="PDB" >Protein DataBank ID (e.g. 2BR9:A)</option> 99 <option value="PDB" >Protein DataBank ID (e.g. 2BR9:A)</option>
115 <options from_data_table="proteore_id_mapping_Mouse"> 115 <options from_data_table="proteore_id_mapping_Mouse">
116 <filter type="sort_by" column="0"/> 116 <filter type="sort_by" column="0"/>
117 </options> 117 </options>
118 </param> 118 </param>
119 <param name="idtypein" type="select" label="Type/source of IDs" optional="false" > 119 <param name="idtypein" type="select" label="Type/source of IDs" optional="false" >
120 <option value="UniProt-AC" selected="True" >UniProt accession number (e.g. P31946)</option> 120 <option value="UniProt-AC" selected="True" >UniProt accession number (e.g. Q8VC49)</option>
121 <option value="UniProt-ID" >UniProt ID (e.g 1433B_HUMAN)</option> 121 <option value="UniProt-ID" >UniProt ID (e.g IF27B_MOUSE)</option>
122 <option value="GeneID" >Entrez gene ID (e.g. 7529)</option> 122 <option value="GeneID" >Entrez gene ID (e.g. 217845)</option>
123 <option value="RefSeq" >RefSeq (NCBI) protein (e.g. NP_003395.1)</option> 123 <option value="RefSeq" >RefSeq (NCBI) protein (e.g. NP_663424.1)</option>
124 <option value="GI" >GI (NCBI GI number) (e.g. 21328448)</option> 124 <option value="GI" >GI (NCBI GI number) (e.g. 148686879)</option>
125 <option value="PDB" >Protein DataBank ID (e.g. 2BR9:A)</option> 125 <option value="PDB" >Protein DataBank ID (e.g. 2BDU:A)</option>
126 <option value="GO" >GOterms (Gene Ontology) ID (e.g. GO:0070062)</option> 126 <option value="GO" >GOterms (Gene Ontology) ID (e.g. GO:0051607)</option>
127 <option value="PIR" >Protein Information Resource ID (e.g. S34755)</option> 127 <option value="PIR" >Protein Information Resource ID (e.g. A93261)</option>
128 <option value="MIM" >OMIM (Online Mendelian Inheritance in Man database) ID (e.g: 601289)</option> 128 <option value="UniGene" >Unigene ID (e.g. Mm.1293)</option>
129 <option value="UniGene" >Unigene ID (e.g. Hs.643544)</option> 129 <option value="Ensembl_Gene" >Ensembl gene ID (e.g. ENSMUSG00000031239)</option>
130 <option value="Ensembl_Gene" >Ensembl gene ID (e.g. ENSG00000166913)</option> 130 <option value="Ensembl_Transcript" >Ensembl transcript ID (e.g. ENSMUST00000033591)</option>
131 <option value="Ensembl_Transcript" >Ensembl transcript ID (e.g. ENST00000353703)</option> 131 <option value="Ensembl_Protein" >Ensembl protein ID (e.g. ENSMUSP00000033591)</option>
132 <option value="Ensembl_Protein" >Ensembl protein ID (e.g. ENSP00000300161)</option> 132 <option value="BioGrid" >BioGrid (e.g. 201578)</option>
133 <option value="BioGrid" >BioGrid (e.g. 113361)</option> 133 <option value="STRING" >STRING (e.g. 10090.ENSMUSP00000041712)</option>
134 <option value="STRING" >STRING (e.g. 9606.ENSP00000300161)</option> 134 <option value="KEGG" >KEGG gene id (e.g. mmu:217845)</option>
135 <option value="KEGG" >KEGG gene id (e.g. hsa:7529)</option>
136 </param> 135 </param>
137 <section name="idto" title="Target type of IDs" expanded="True" > 136 <section name="idto" title="Target type of IDs" expanded="True" >
138 <param name="idtypeout" type="select" label="Target type of IDs you would like to map to" display="checkboxes" multiple="True" optional="false" > 137 <param name="idtypeout" type="select" label="Target type of IDs you would like to map to" display="checkboxes" multiple="True" optional="false" >
139 <option value="UniProt-AC_reviewed" >UniProt accession number (e.g. P31946 - reviewed entries only)</option> 138 <option value="UniProt-AC" >UniProt accession number (e.g. Q8VC49 - reviewed entries only)</option>
140 <option value="UniProt-AC" >UniProt accession number (e.g. P31946 - reviewed and unreviewed entries)</option> 139 <!--option value="UniProt-AC" >UniProt accession number (e.g. Q8VC49 - reviewed and unreviewed entries)</option-->
141 <option value="UniProt-ID" >UniProt ID (e.g 1433B_HUMAN)</option> 140 <option value="UniProt-ID" >UniProt ID (e.g IF27B_MOUSE)</option>
142 <option value="GeneID" >Entrez gene ID (e.g. 7529)</option> 141 <option value="GeneID" >Entrez gene ID (e.g. 217845)</option>
143 <option value="RefSeq" >RefSeq (NCBI) protein (e.g. NP_003395.1)</option> 142 <option value="RefSeq" >RefSeq (NCBI) protein (e.g. NP_663424.1)</option>
144 <option value="GI" >GI (NCBI GI number) (e.g. 21328448)</option> 143 <option value="GI" >GI (NCBI GI number) (e.g. 148686879)</option>
145 <option value="PDB" >Protein DataBank ID (e.g. 2BR9:A)</option> 144 <option value="PDB" >Protein DataBank ID (e.g. 2BDU:A)</option>
146 <option value="GO" >GOterms (Gene Ontology) ID (e.g. GO:0070062)</option> 145 <option value="GO" >GOterms (Gene Ontology) ID (e.g. GO:0051607)</option>
147 <option value="PIR" >Protein Information Resource ID (e.g. S34755)</option> 146 <option value="PIR" >Protein Information Resource ID (e.g. A93261)</option>
148 <option value="UniGene" >Unigene ID (e.g. Hs.643544)</option> 147 <option value="UniGene" >Unigene ID (e.g. Mm.1293)</option>
149 <option value="Ensembl_Gene" >Ensembl gene ID (e.g. ENSG00000166913)</option> 148 <option value="Ensembl_Gene" >Ensembl gene ID (e.g. ENSMUSG00000031239)</option>
150 <option value="Ensembl_Transcript" >Ensembl transcript ID (e.g. ENST00000353703)</option> 149 <option value="Ensembl_Transcript" >Ensembl transcript ID (e.g. ENSMUST00000033591)</option>
151 <option value="Ensembl_Protein" >Ensembl protein ID (e.g. ENSP00000300161)</option> 150 <option value="Ensembl_Protein" >Ensembl protein ID (e.g. ENSMUSP00000033591)</option>
152 <option value="BioGrid" >BioGrid (e.g. 113361)</option> 151 <option value="BioGrid" >BioGrid (e.g. 201578)</option>
153 <option value="STRING" >STRING (e.g. 9606.ENSP00000300161)</option> 152 <option value="STRING" >STRING (e.g. 10090.ENSMUSP00000041712)</option>
154 <option value="KEGG" >KEGG gene id (e.g. hsa:7529)</option> 153 <option value="KEGG" >KEGG gene id (e.g. mmu:217845)</option>
155 </param> 154 </param>
156 </section> 155 </section>
157 </when> 156 </when>
158 <when value="Rat"> 157 <when value="Rat">
159 <param name="mapping_file" type="select" label="Release" > 158 <param name="mapping_file" type="select" label="Release" >
160 <options from_data_table="proteore_id_mapping_Rat"> 159 <options from_data_table="proteore_id_mapping_Rat">
161 <filter type="sort_by" column="0"/> 160 <filter type="sort_by" column="0"/>
162 </options> 161 </options>
163 </param> 162 </param>
164 <param name="idtypein" type="select" label="Select type/source of identifier of your list" optional="false" > 163 <param name="idtypein" type="select" label="Select type/source of identifier of your list" optional="false" >
165 <option value="UniProt-AC" selected="True" >UniProt accession number (e.g. P31946)</option> 164 <option value="UniProt-AC" >UniProt accession number (e.g. A0JPJ7 - reviewed entries only)</option>
166 <option value="UniProt-ID" >UniProt ID (e.g 1433B_HUMAN)</option> 165 <option value="UniProt-ID" >UniProt ID (e.g OLA1_RAT)</option>
167 <option value="GeneID" >Entrez gene ID (e.g. 7529)</option> 166 <option value="GeneID" >Entrez gene ID (e.g. 296488)</option>
168 <option value="RefSeq" >RefSeq (NCBI) protein (e.g. NP_003395.1)</option> 167 <option value="RefSeq" >RefSeq (NCBI) protein (e.g. NP_001029099.1)</option>
169 <option value="GI" >GI (NCBI GI number) (e.g. 21328448)</option> 168 <option value="GI" >GI (NCBI GI number) (e.g. 117558623)</option>
170 <option value="PDB" >Protein DataBank ID (e.g. 2BR9:A)</option> 169 <option value="PDB" >Protein DataBank ID (e.g. 6EPD:O)</option>
171 <option value="GO" >GOterms (Gene Ontology) ID (e.g. GO:0070062)</option> 170 <option value="GO" >GOterms (Gene Ontology) ID (e.g. GO:0005737)</option>
172 <option value="PIR" >Protein Information Resource ID (e.g. S34755)</option> 171 <option value="PIR" >Protein Information Resource ID (e.g. PT0204)</option>
173 <option value="MIM" >OMIM (Online Mendelian Inheritance in Man database) ID (e.g: 601289)</option> 172 <option value="UniGene" >Unigene ID (e.g. Rn.34914)</option>
174 <option value="UniGene" >Unigene ID (e.g. Hs.643544)</option> 173 <option value="Ensembl_Gene" >Ensembl gene ID (e.g. ENSRNOG00000019047)</option>
175 <option value="Ensembl_Gene" >Ensembl gene ID (e.g. ENSG00000166913)</option> 174 <option value="Ensembl_Transcript" >Ensembl transcript ID (e.g. ENSRNOT00000026040)</option>
176 <option value="Ensembl_Transcript" >Ensembl transcript ID (e.g. ENST00000353703)</option> 175 <option value="Ensembl_Protein" >Ensembl protein ID (e.g. ENSRNOP00000026040)</option>
177 <option value="Ensembl_Protein" >Ensembl protein ID (e.g. ENSP00000300161)</option> 176 <option value="BioGrid" >BioGrid (e.g. 253944)</option>
178 <option value="BioGrid" >BioGrid (e.g. 113361)</option> 177 <option value="STRING" >STRING (e.g. 10116.ENSRNOP00000054039)</option>
179 <option value="STRING" >STRING (e.g. 9606.ENSP00000300161)</option> 178 <option value="KEGG" >KEGG gene id (e.g. rno:296488)</option>
180 <option value="KEGG" >KEGG gene id (e.g. hsa:7529)</option>
181 </param> 179 </param>
182 <section name="idto" title="Target type of IDs" expanded="True" > 180 <section name="idto" title="Target type of IDs" expanded="True" >
183 <param name="idtypeout" type="select" label="Target type of IDs you would like to map to" display="checkboxes" multiple="True" optional="false" > 181 <param name="idtypeout" type="select" label="Target type of IDs you would like to map to" display="checkboxes" multiple="True" optional="false" >
184 <option value="UniProt-AC_reviewed" >UniProt accession number (e.g. P31946 - reviewed entries only)</option> 182 <option value="UniProt-AC" >UniProt accession number (e.g. A0JPJ7 - reviewed entries only)</option>
185 <option value="UniProt-AC" >UniProt accession number (e.g. P31946 - reviewed and unreviewed entries)</option> 183 <!--option value="UniProt-AC" >UniProt accession number (e.g. A0JPJ7 - reviewed and unreviewed entries)</option-->
186 <option value="UniProt-ID" >UniProt ID (e.g 1433B_HUMAN)</option> 184 <option value="UniProt-ID" >UniProt ID (e.g OLA1_RAT)</option>
187 <option value="GeneID" >Entrez gene ID (e.g. 7529)</option> 185 <option value="GeneID" >Entrez gene ID (e.g. 296488)</option>
188 <option value="RefSeq" >RefSeq (NCBI) protein (e.g. NP_003395.1)</option> 186 <option value="RefSeq" >RefSeq (NCBI) protein (e.g. NP_001029099.1)</option>
189 <option value="GI" >GI (NCBI GI number) (e.g. 21328448)</option> 187 <option value="GI" >GI (NCBI GI number) (e.g. 117558623)</option>
190 <option value="PDB" >Protein DataBank ID (e.g. 2BR9:A)</option> 188 <option value="PDB" >Protein DataBank ID (e.g. 6EPD:O)</option>
191 <option value="GO" >GOterms (Gene Ontology) ID (e.g. GO:0070062)</option> 189 <option value="GO" >GOterms (Gene Ontology) ID (e.g. GO:0005737)</option>
192 <option value="PIR" >Protein Information Resource ID (e.g. S34755)</option> 190 <option value="PIR" >Protein Information Resource ID (e.g. PT0204)</option>
193 <option value="UniGene" >Unigene ID (e.g. Hs.643544)</option> 191 <option value="UniGene" >Unigene ID (e.g. Rn.34914)</option>
194 <option value="Ensembl_Gene" >Ensembl gene ID (e.g. ENSG00000166913)</option> 192 <option value="Ensembl_Gene" >Ensembl gene ID (e.g. ENSRNOG00000019047)</option>
195 <option value="Ensembl_Transcript" >Ensembl transcript ID (e.g. ENST00000353703)</option> 193 <option value="Ensembl_Transcript" >Ensembl transcript ID (e.g. ENSRNOT00000026040)</option>
196 <option value="Ensembl_Protein" >Ensembl protein ID (e.g. ENSP00000300161)</option> 194 <option value="Ensembl_Protein" >Ensembl protein ID (e.g. ENSRNOP00000026040)</option>
197 <option value="BioGrid" >BioGrid (e.g. 113361)</option> 195 <option value="BioGrid" >BioGrid (e.g. 253944)</option>
198 <option value="STRING" >STRING (e.g. 9606.ENSP00000300161)</option> 196 <option value="STRING" >STRING (e.g. 10116.ENSRNOP00000054039)</option>
199 <option value="KEGG" >KEGG gene id (e.g. hsa:7529)</option> 197 <option value="KEGG" >KEGG gene id (e.g. rno:296488)</option>
200 </param> 198 </param>
201 </section> 199 </section>
202 </when> 200 </when>
203 </conditional> 201 </conditional>
204 </inputs> 202 </inputs>
215 </conditional> 213 </conditional>
216 <conditional name="species"> 214 <conditional name="species">
217 <param name="mapping_file" value="human_id_mapping"/> 215 <param name="mapping_file" value="human_id_mapping"/>
218 <param name="idtypein" value="UniProt-AC"/> 216 <param name="idtypein" value="UniProt-AC"/>
219 <section name="idto"> 217 <section name="idto">
220 <param name="idtypeout" value="neXtProt,UniProt-ID,GeneID,MIM,Ensembl" /> 218 <param name="idtypeout" value="neXtProt,UniProt-ID,GeneID,MIM,Ensembl_Gene" />
221 </section> 219 </section>
222 </conditional> 220 </conditional>
223 <output name="output" value="ID_Converted_FKW_Lacombe_et_al_2017_OK.txt" /> 221 <output name="output" value="ID_Converted_FKW_Lacombe_et_al_2017_OK.txt" />
224 </test> 222 </test>
225 </tests> 223 </tests>
236 If your input is a multiple-column file, the mapped IDs column(s) will be added at the end of the input file. 234 If your input is a multiple-column file, the mapped IDs column(s) will be added at the end of the input file.
237 235
238 .. class:: warningmark 236 .. class:: warningmark
239 237
240 Accession numbers with an hyphen ("-") that normally correspond to isoform are considered as similar to its canonical form. 238 Accession numbers with an hyphen ("-") that normally correspond to isoform are considered as similar to its canonical form.
241 For example, "Q71U36-2" will be treated as "Q71U36". 239 For example, "Q71U36-2" will be treated as "Q71U36".
240
241 .. class:: warningmark
242
243 In copy/paste mode, the number of IDs considered in input is limited to 5000.
242 244
243 ----- 245 -----
244 246
245 **Parameters** 247 **Parameters**
246 Target type of IDs currently supported: 248 Target type of IDs currently supported:
247 249
248 * neXtProt ID (e.g. NX_P31946) 250 * neXtProt ID (e.g. NX_P31946)
249 251
250 * UniProt accession number (e.g. P31946 - reviewed entries only) 252 * UniProt accession number (e.g. P31946 - reviewed entries only)
251 253
252 * UniProt accession number (e.g. P31946 - reviewed and unreviewed entries) 254 * UniProt ID (e.g 1433B_HUMAN - reviewed entries only)
253
254 * UniProt ID (e.g 1433B_HUMAN)
255 255
256 * Entrez gene ID (e.g. 7529) 256 * Entrez gene ID (e.g. 7529)
257 257
258 * RefSeq protein (NCBI) (e.g. NP_003395.1) 258 * RefSeq protein (NCBI) (e.g. NP_003395.1)
259 259
282 * KEGG gene id (e.g. hsa:7529) 282 * KEGG gene id (e.g. hsa:7529)
283 283
284 .. class:: warningmark 284 .. class:: warningmark
285 285
286 Nextprot and OMIM only applicable to Human species. 286 Nextprot and OMIM only applicable to Human species.
287
288 .. class:: warningmark
289
290 For Uniprot-AC and uniprot-ID, only reviewed IDs are considered here, except for releases before 08-05-2019 where all uniprot-AC and uniprot-ID (at the time) are considered.
287 291
288 ----- 292 -----
289 293
290 **Output** 294 **Output**
291 295
296 300
297 **Data sources (release date)** 301 **Data sources (release date)**
298 302
299 This tool converts human IDs using the following source files: 303 This tool converts human IDs using the following source files:
300 304
301 - **HUMAN_9606_idmapping_selected.tab (Uniprot 23/10/2018)**: ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/ 305 - Current release of Uniprot, for idmapping_selected.tab and idmapping.dat for Human, Mouse and Rat: ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism
302 - **HUMAN_9606_idmapping.dat (Uniprot 23/10/18)**: ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/ 306 - All previous release of uniprot can be found here: ftp://ftp.uniprot.org/pub/databases/uniprot/previous_releases/
303 - `Human uniprot-AC entries reviewed <https://www.uniprot.org/uniprot/?query=reviewed:yes+AND+organism:9606&format=list>`_. 307 - **nextprot_ac_list_all.txt (Nextprot released on 13/02/2019 - current)**: ftp://ftp.nextprot.org/pub/current_release/ac_lists/
304 - **nextprot_ac_list_all.txt (Nextprot released on 10/10/2018)**: ftp://ftp.nextprot.org/pub/current_release/ac_lists/ 308 - All previous release of **nextprot_ac_list_all.txt** can be foud here: ftp://ftp.nextprot.org/pub/previous_releases/
305 - **MOUSE_10090_idmapping_selected.tab (Uniprot 23/10/2018)**: ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/ 309 - `Human uniprot-AC entries reviewed (05/06/2019) <https://www.uniprot.org/uniprot/?query=reviewed:yes+AND+organism:9606+AND+created:[20120720%20TO%2020190605]&format=list>`_.
306 - **MOUSE_10090_idmapping.dat (Uniprot 23/10/18)**: ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/ 310 - `Mouse uniprot-AC entries reviewed (05/06/2019) <https://www.uniprot.org/uniprot/?query=reviewed:yes+AND+organism:10090+AND+created:[20120720%20TO%2020190605]&format=list>`_.
307 - `Mouse uniprot-AC entries reviewed <https://www.uniprot.org/uniprot/?query=reviewed:yes+AND+organism:10090&format=list>`_. 311 - `Rat uniprot-AC entries reviewed (05/06/2019) <https://www.uniprot.org/uniprot/?query=reviewed:yes+AND+organism:10116+AND+created:[20120720%20TO%2020190605]&format=list>`_.
308 - **RAT_10116_idmapping.dat (Uniprot 23/10/18)**: ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/ 312 - `Human uniprot-AC entries reviewed (08/05/2019) <https://www.uniprot.org/uniprot/?query=reviewed:yes+AND+organism:9606+AND+created:[20120720%20TO%2020190508]&format=list>`_.
309 - **RAT_10116_idmapping_selected.tab (Uniprot 23/10/18)**: ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/ 313 - `Mouse uniprot-AC entries reviewed (08/05/2019) <https://www.uniprot.org/uniprot/?query=reviewed:yes+AND+organism:10090+AND+created:[20120720%20TO%2020190508]&format=list>`_.
310 - `Rat uniprot-AC entries reviewed <https://www.uniprot.org/uniprot/?query=reviewed:yes+AND+organism:10116&format=list>`_. 314 - `Rat uniprot-AC entries reviewed (08/05/2019) <https://www.uniprot.org/uniprot/?query=reviewed:yes+AND+organism:10116+AND+created:[20120720%20TO%2020190508]&format=list>`_.
315 - `Human uniprot-AC entries reviewed (10/10/2018) <https://www.uniprot.org/uniprot/?query=reviewed:yes+AND+organism:9606+AND+created:[20120720%20TO%2020181010]&format=list>`_.
316 - `Mouse uniprot-AC entries reviewed (10/10/2018) <https://www.uniprot.org/uniprot/?query=reviewed:yes+AND+organism:10090+AND+created:[20120720%20TO%2020181010]&format=list>`_.
317 - `Rat uniprot-AC entries reviewed (10/10/2018) <https://www.uniprot.org/uniprot/?query=reviewed:yes+AND+organism:10116+AND+created:[20120720%20TO%2020181010]&format=list>`_.
311 318
312 ----- 319 -----
313 320
314 .. class:: infomark 321 .. class:: infomark
315 322