Mercurial > repos > proteore > proteore_id_converter
comparison id_converter.xml @ 11:e30234018582 draft
Uploaded
| author | proteore |
|---|---|
| date | Mon, 27 Aug 2018 06:05:51 -0400 |
| parents | b1e3473fee5f |
| children | 659f1248f535 |
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| 10:ec2adfa349bc | 11:e30234018582 |
|---|---|
| 1 <tool id="IDconverter" name="ID Converter" version="0.1.1"> | 1 <tool id="IDconverter" name="ID Converter" version="0.1.2"> |
| 2 <description>convert public database identifiers | 2 <description>convert public database identifiers |
| 3 </description> | 3 </description> |
| 4 <requirements> | 4 <requirements> |
| 5 <requirement type="package" version="3.4.1">R</requirement> | 5 <requirement type="package" version="3.4.1">R</requirement> |
| 6 </requirements> | 6 </requirements> |
| 47 <param name="header" type="boolean" checked="true" truevalue="true" falsevalue="false" label="Does your input file contain header?" /> | 47 <param name="header" type="boolean" checked="true" truevalue="true" falsevalue="false" label="Does your input file contain header?" /> |
| 48 <param name="ncol" type="text" value="c1" label="The column number of IDs to map" help='For example, fill in "c1" if it is the first column, "c2" if it is the second column and so on' /> | 48 <param name="ncol" type="text" value="c1" label="The column number of IDs to map" help='For example, fill in "c1" if it is the first column, "c2" if it is the second column and so on' /> |
| 49 </when> | 49 </when> |
| 50 </conditional> | 50 </conditional> |
| 51 <param name="human_id_mapping" type="select" label="Select species for ID conversion" > | 51 <param name="human_id_mapping" type="select" label="Select species for ID conversion" > |
| 52 <options from_file="human_id_mapping.loc" > | 52 <options from_data_table="human_id_mapping" > |
| 53 <column name="name" index="1" /> | |
| 54 <column name="value" index="2" /> | |
| 55 </options> | 53 </options> |
| 56 </param> | 54 </param> |
| 57 <conditional name="idti" > | 55 <conditional name="idti" > |
| 58 <param name="idtypein" type="select" label="Select type/source of identifier of your list" help="Please see example of IDs in help section" > | 56 <param name="idtypein" type="select" label="Select type/source of identifier of your list" help="Please see example of IDs in help section" > |
| 59 <option value="neXtProt_ID" >neXtProt ID (e.g. NX_P31946)</option> | 57 <option value="neXtProt_ID" >neXtProt ID (e.g. NX_P31946)</option> |