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planemo upload commit 74f72978b11230744b116d34fe3f2aa7934bf545-dirty
author proteore
date Tue, 27 Feb 2018 08:42:18 -0500
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+Wrapper for ID Converter tool
+=============================
+
+**Authors**
+
+T.P. Lien Nguyen, Florence Combes, Yves Vandenbrouck CEA, INSERM, CNRS, Grenoble-Alpes University, BIG Institute, FR
+
+Sandra Dérozier, Olivier Rué, Christophe Caron, Valentin Loux INRA, Paris-Saclay University, MAIAGE Unit, Migale Bioinformatics platform
+
+This work has been partially funded through the French National Agency for Research (ANR) IFB project.
+
+Contact support@proteore.org for any questions or concerns about the Galaxy implementation of this tool.
+
+=============================
+
+This tool converts a list of IDs to another identifier type, select the source and target type from the dropdown menus above (see below supported source and target types).
+
+After choosing the type of input IDs, you can choose one or more types of IDs you would like to map to. 
+
+If your input is a list of IDs or a single-column file, the tool will return a file containing the mapped IDs.
+
+If your input is a multiple-column file, the mapped IDs column(s) will be added at the end of the input file.
+
+**Available databases**
+
+* neXtProt ID (e.g. NX_P31946)
+
+* Uniprot accession number (e.g. P31946)
+
+* Uniprot ID (e.g 1433B_HUMAN)
+
+* Entrez gene ID (e.g. 7529)
+
+* RefSeq (NCBI) protein (e.g.  NP_003395.1; NP_647539.1; XP_016883528.1)
+
+* GI (NCBI GI number) ID assigned to each sequence record processed by NCBI (e.g. 21328448; 377656701; 67464627; 78101741)
+
+* Protein DataBank ID (e.g. 2BR9:A; 3UAL:A;   3UBW:A)
+
+* GOterms (Gene Ontology) ID (e.g. GO:0070062; GO:0005925; GO:0042470; GO:0016020; GO:0005739; GO:0005634)
+
+* Protein Information Resource ID (e.g. S34755)
+
+* OMIM (Online Mendelian Inheritance in Man database) ID (e.g: 601289)
+
+* Unigene ID (e.g. Hs.643544)
+
+* Ensembl gene ID (e.g. ENSG00000166913)
+
+* Ensembl transcript ID (e.g. ENST00000353703; ENST00000372839)
+
+* Ensembl protein ID (e.g. ENSP00000300161; ENSP00000361930)
+
+This tool converts human IDs using file built from:
+
+* HUMAN_9606_idmapping_selected.tab
+    Tarball downloaded from ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/
+
+* nextprot_ac_list_all.txt 
+    Downloaded from ftp://ftp.nextprot.org/pub/current_release/ac_lists/
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