Mercurial > repos > proteore > proteore_id_converter

diff id_converter.xml @ 1:3b654cb3f6ad draft

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planemo upload commit 74f72978b11230744b116d34fe3f2aa7934bf545-dirty
author proteore
date Tue, 27 Feb 2018 08:42:18 -0500
parents f2d0b13d9615
children 9b3a4ee0dcc6
line wrap: on
line diff
--- a/id_converter.xml	Fri Feb 16 03:16:29 2018 -0500
+++ b/id_converter.xml	Tue Feb 27 08:42:18 2018 -0500
@@ -2,12 +2,13 @@
     <description>convert public database identifiers (Homo sapiens only for now)
     </description>
     <requirements>
+      <requirement type="package" version="3.4.1">R</requirement>
     </requirements>
     <stdio>
         <exit_code range="1:" />
     </stdio>
     <command interpreter="Rscript">
-        id_converter_UniProt.R
+        $__tool_directory__/id_converter_UniProt.R
         "$idti.idtypein"
         #if $input.ids == "text"
             "$input.txt"
@@ -18,7 +19,7 @@
         #end if
         "$idto.idtypeout"
         "$output"
-        $__tool_directory__/../../utils/human_id_mapping_file.txt
+        $__tool_directory__/tool-data/human_id_mapping_file.txt
         
     </command>
     <inputs>