Mercurial > repos > proteore > proteore_id_converter
diff id_converter.xml @ 3:72860740f65f draft
planemo upload commit 08f1831e097df5d74bf60ff5955e7e9c8e524cc8-dirty
author | proteore |
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date | Wed, 14 Mar 2018 10:13:40 -0400 |
parents | 9b3a4ee0dcc6 |
children | 0584344186eb |
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--- a/id_converter.xml Thu Mar 08 10:39:34 2018 -0500 +++ b/id_converter.xml Wed Mar 14 10:13:40 2018 -0400 @@ -43,7 +43,7 @@ <when value="file" > <param name="file" type="data" format="txt,tabular" label="Choose a file that contains your list of IDs" help="" /> <param name="header" type="boolean" checked="true" truevalue="true" falsevalue="false" label="Does your input file contain header?" /> - <param name="ncol" type="text" label="The column number of IDs to map" help='For example, fill in "c1" if it is the first column, "c2" if it is the second column and so on' /> + <param name="ncol" type="text" value="c1" label="The column number of IDs to map" help='For example, fill in "c1" if it is the first column, "c2" if it is the second column and so on' /> </when> </conditional> <conditional name="idti" > @@ -176,10 +176,10 @@ This tool converts human IDs using the following source files: -* HUMAN_9606_idmapping_selected.tab +* HUMAN_9606_idmapping_selected.tab (Uniprot released on 12/2017) Tarball downloaded from ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/ -* nextprot_ac_list_all.txt +* nextprot_ac_list_all.txt (Nextprot released on 01/08/2017) Downloaded from ftp://ftp.nextprot.org/pub/current_release/ac_lists/ -----