diff README.rst @ 15:b50d913ec067 draft

planemo upload commit bdd7e8a1f08c11db2a9f1b6db5535c6d32153b2b

--- a/README.rst	Wed Sep 19 04:45:04 2018 -0400
+++ b/README.rst	Tue Dec 18 09:57:21 2018 -0500
@@ -3,7 +3,7 @@
 
 **Authors**
 
-T.P. Lien Nguyen, David Christiany, Florence Combes, Yves Vandenbrouck CEA, INSERM, CNRS, Grenoble-Alpes University, BIG Institute, FR
+David Christiany, T.P. Lien Nguyen, Florence Combes, Yves Vandenbrouck CEA, INSERM, CNRS, Grenoble-Alpes University, BIG Institute, FR
 
 Sandra Dérozier, Olivier Rué, Christophe Caron, Valentin Loux INRA, Paris-Saclay University, MAIAGE Unit, Migale Bioinformatics platform
 
@@ -51,10 +51,35 @@
 
 * Ensembl protein ID (e.g. ENSP00000300161; ENSP00000361930)
 
+* BioGrid (e.g. 113361)
+
+* STRING (e.g. 9606.ENSP00000300161)
+
+* KEGG gene id (e.g. hsa:7529)
+
+.. class:: warningmark 
+
+Nextprot and OMIM are only available for Human.
+
 This tool converts human IDs using file built from:
 
-* HUMAN_9606_idmapping_selected.tab
+* HUMAN_9606_idmapping_selected.tab (Uniprot 23/10/2018)
+    Tarball downloaded from ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/
+
+* HUMAN_9606_idmapping.dat (Uniprot 23/10/18)
     Tarball downloaded from ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/
 
-* nextprot_ac_list_all.txt 
-    Downloaded from ftp://ftp.nextprot.org/pub/current_release/ac_lists/
\ No newline at end of file
+* nextprot_ac_list_all.txt (Nextprot released on 10/10/2018)
+    Downloaded from ftp://ftp.nextprot.org/pub/current_release/ac_lists/
+
+* MOUSE_10090_idmapping_selected.tab (Uniprot 23/10/2018)
+    Tarball downloaded from ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/
+
+* MOUSE_10090_idmapping.dat (Uniprot 23/10/18)
+    Tarball downloaded from ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/
+
+* RAT_10116_idmapping.dat (Uniprot 23/10/18)
+    Tarball downloaded from ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/
+
+* RAT_10116_idmapping_selected.tab (Uniprot 23/10/18)
+    Tarball downloaded from ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/