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annotate tool-data/hsa_pathways.loc.sample @ 6:eb140217a9f1 draft default tip

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"planemo upload commit 1f9a98db2496834cc38a281cbe3d4b11de2bc3d2-dirty"
author proteore
date Thu, 05 Mar 2020 10:10:20 -0500
parents 9845dc9c7323
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1 #value name
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2 hsa00010 Glycolysis / Gluconeogenesis
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3 hsa00020 Citrate cycle (TCA cycle)
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4 hsa00030 Pentose phosphate pathway
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5 hsa00040 Pentose and glucuronate interconversions
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6 hsa00051 Fructose and mannose metabolism
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7 hsa00052 Galactose metabolism
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8 hsa00053 Ascorbate and aldarate metabolism
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9 hsa00061 Fatty acid biosynthesis
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10 hsa00062 Fatty acid elongation
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11 hsa00071 Fatty acid degradation
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12 hsa00072 Synthesis and degradation of ketone bodies
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13 hsa00100 Steroid biosynthesis
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14 hsa00120 Primary bile acid biosynthesis
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15 hsa00130 Ubiquinone and other terpenoid-quinone biosynthesis
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16 hsa00140 Steroid hormone biosynthesis
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17 hsa00190 Oxidative phosphorylation
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18 hsa00220 Arginine biosynthesis
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19 hsa00230 Purine metabolism
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20 hsa00232 Caffeine metabolism
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21 hsa00240 Pyrimidine metabolism
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22 hsa00250 Alanine, aspartate and glutamate metabolism
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23 hsa00260 Glycine, serine and threonine metabolism
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24 hsa00270 Cysteine and methionine metabolism
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25 hsa00280 Valine, leucine and isoleucine degradation
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26 hsa00290 Valine, leucine and isoleucine biosynthesis
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27 hsa00310 Lysine degradation
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28 hsa00330 Arginine and proline metabolism
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29 hsa00340 Histidine metabolism
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30 hsa00350 Tyrosine metabolism
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31 hsa00360 Phenylalanine metabolism
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32 hsa00380 Tryptophan metabolism
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33 hsa00400 Phenylalanine, tyrosine and tryptophan biosynthesis
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34 hsa00410 beta-Alanine metabolism
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35 hsa00430 Taurine and hypotaurine metabolism
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36 hsa00440 Phosphonate and phosphinate metabolism
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37 hsa00450 Selenocompound metabolism
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38 hsa00471 D-Glutamine and D-glutamate metabolism
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39 hsa00472 D-Arginine and D-ornithine metabolism
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40 hsa00480 Glutathione metabolism
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41 hsa00500 Starch and sucrose metabolism
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42 hsa00510 N-Glycan biosynthesis
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43 hsa00511 Other glycan degradation
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44 hsa00512 Mucin type O-glycan biosynthesis
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45 hsa00514 Other types of O-glycan biosynthesis
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46 hsa00515 Mannose type O-glycan biosynthesis
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47 hsa00520 Amino sugar and nucleotide sugar metabolism
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48 hsa00524 Neomycin, kanamycin and gentamicin biosynthesis
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49 hsa00531 Glycosaminoglycan degradation
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50 hsa00532 Glycosaminoglycan biosynthesis
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51 hsa00533 Glycosaminoglycan biosynthesis
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52 hsa00534 Glycosaminoglycan biosynthesis
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53 hsa00561 Glycerolipid metabolism
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54 hsa00562 Inositol phosphate metabolism
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55 hsa00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis
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56 hsa00564 Glycerophospholipid metabolism
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57 hsa00565 Ether lipid metabolism
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58 hsa00590 Arachidonic acid metabolism
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59 hsa00591 Linoleic acid metabolism
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60 hsa00592 alpha-Linolenic acid metabolism
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61 hsa00600 Sphingolipid metabolism
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62 hsa00601 Glycosphingolipid biosynthesis
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63 hsa00603 Glycosphingolipid biosynthesis
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64 hsa00604 Glycosphingolipid biosynthesis
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65 hsa00620 Pyruvate metabolism
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66 hsa00630 Glyoxylate and dicarboxylate metabolism
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67 hsa00640 Propanoate metabolism
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68 hsa00650 Butanoate metabolism
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69 hsa00670 One carbon pool by folate
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70 hsa00730 Thiamine metabolism
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71 hsa00740 Riboflavin metabolism
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72 hsa00750 Vitamin B6 metabolism
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73 hsa00760 Nicotinate and nicotinamide metabolism
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74 hsa00770 Pantothenate and CoA biosynthesis
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75 hsa00780 Biotin metabolism
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76 hsa00785 Lipoic acid metabolism
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77 hsa00790 Folate biosynthesis
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78 hsa00830 Retinol metabolism
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79 hsa00860 Porphyrin and chlorophyll metabolism
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80 hsa00900 Terpenoid backbone biosynthesis
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81 hsa00910 Nitrogen metabolism
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82 hsa00920 Sulfur metabolism
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83 hsa00970 Aminoacyl-tRNA biosynthesis
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84 hsa00980 Metabolism of xenobiotics by cytochrome P450
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85 hsa00982 Drug metabolism
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86 hsa00983 Drug metabolism
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87 hsa01040 Biosynthesis of unsaturated fatty acids
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88 hsa01100 Metabolic pathways
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89 hsa01200 Carbon metabolism
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90 hsa01210 2-Oxocarboxylic acid metabolism
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91 hsa01212 Fatty acid metabolism
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92 hsa01230 Biosynthesis of amino acids
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93 hsa01521 EGFR tyrosine kinase inhibitor resistance
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94 hsa01522 Endocrine resistance
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95 hsa01523 Antifolate resistance
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96 hsa01524 Platinum drug resistance
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97 hsa02010 ABC transporters
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98 hsa03008 Ribosome biogenesis in eukaryotes
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99 hsa03010 Ribosome
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100 hsa03013 RNA transport
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101 hsa03015 mRNA surveillance pathway
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102 hsa03018 RNA degradation
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103 hsa03020 RNA polymerase
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104 hsa03022 Basal transcription factors
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105 hsa03030 DNA replication
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106 hsa03040 Spliceosome
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107 hsa03050 Proteasome
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108 hsa03060 Protein export
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109 hsa03320 PPAR signaling pathway
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110 hsa03410 Base excision repair
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111 hsa03420 Nucleotide excision repair
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112 hsa03430 Mismatch repair
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113 hsa03440 Homologous recombination
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114 hsa03450 Non-homologous end-joining
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115 hsa03460 Fanconi anemia pathway
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116 hsa04010 MAPK signaling pathway
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117 hsa04012 ErbB signaling pathway
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118 hsa04014 Ras signaling pathway
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119 hsa04015 Rap1 signaling pathway
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120 hsa04020 Calcium signaling pathway
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121 hsa04022 cGMP-PKG signaling pathway
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122 hsa04024 cAMP signaling pathway
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123 hsa04060 Cytokine-cytokine receptor interaction
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124 hsa04062 Chemokine signaling pathway
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125 hsa04064 NF-kappa B signaling pathway
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126 hsa04066 HIF-1 signaling pathway
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127 hsa04068 FoxO signaling pathway
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128 hsa04070 Phosphatidylinositol signaling system
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129 hsa04071 Sphingolipid signaling pathway
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130 hsa04072 Phospholipase D signaling pathway
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131 hsa04080 Neuroactive ligand-receptor interaction
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132 hsa04110 Cell cycle
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133 hsa04114 Oocyte meiosis
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134 hsa04115 p53 signaling pathway
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135 hsa04120 Ubiquitin mediated proteolysis
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136 hsa04122 Sulfur relay system
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137 hsa04130 SNARE interactions in vesicular transport
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138 hsa04136 Autophagy
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139 hsa04137 Mitophagy
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140 hsa04140 Autophagy
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141 hsa04141 Protein processing in endoplasmic reticulum
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142 hsa04142 Lysosome
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143 hsa04144 Endocytosis
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144 hsa04145 Phagosome
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145 hsa04146 Peroxisome
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146 hsa04150 mTOR signaling pathway
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147 hsa04151 PI3K-Akt signaling pathway
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148 hsa04152 AMPK signaling pathway
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149 hsa04210 Apoptosis
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150 hsa04211 Longevity regulating pathway
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151 hsa04213 Longevity regulating pathway
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152 hsa04215 Apoptosis
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153 hsa04216 Ferroptosis
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154 hsa04217 Necroptosis
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155 hsa04218 Cellular senescence
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156 hsa04260 Cardiac muscle contraction
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157 hsa04261 Adrenergic signaling in cardiomyocytes
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158 hsa04270 Vascular smooth muscle contraction
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159 hsa04310 Wnt signaling pathway
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160 hsa04330 Notch signaling pathway
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161 hsa04340 Hedgehog signaling pathway
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162 hsa04350 TGF-beta signaling pathway
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163 hsa04360 Axon guidance
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164 hsa04370 VEGF signaling pathway
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165 hsa04371 Apelin signaling pathway
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166 hsa04380 Osteoclast differentiation
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167 hsa04390 Hippo signaling pathway
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168 hsa04392 Hippo signaling pathway
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169 hsa04510 Focal adhesion
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170 hsa04512 ECM-receptor interaction
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171 hsa04514 Cell adhesion molecules (CAMs)
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172 hsa04520 Adherens junction
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173 hsa04530 Tight junction
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174 hsa04540 Gap junction
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175 hsa04550 Signaling pathways regulating pluripotency of stem cells
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176 hsa04610 Complement and coagulation cascades
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177 hsa04611 Platelet activation
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178 hsa04612 Antigen processing and presentation
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179 hsa04614 Renin-angiotensin system
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180 hsa04620 Toll-like receptor signaling pathway
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181 hsa04621 NOD-like receptor signaling pathway
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182 hsa04622 RIG-I-like receptor signaling pathway
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183 hsa04623 Cytosolic DNA-sensing pathway
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184 hsa04625 C-type lectin receptor signaling pathway
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185 hsa04630 Jak-STAT signaling pathway
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186 hsa04640 Hematopoietic cell lineage
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187 hsa04650 Natural killer cell mediated cytotoxicity
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188 hsa04657 IL-17 signaling pathway
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189 hsa04658 Th1 and Th2 cell differentiation
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190 hsa04659 Th17 cell differentiation
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191 hsa04660 T cell receptor signaling pathway
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192 hsa04662 B cell receptor signaling pathway
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193 hsa04664 Fc epsilon RI signaling pathway
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194 hsa04666 Fc gamma R-mediated phagocytosis
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195 hsa04668 TNF signaling pathway
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196 hsa04670 Leukocyte transendothelial migration
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197 hsa04672 Intestinal immune network for IgA production
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198 hsa04710 Circadian rhythm
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199 hsa04713 Circadian entrainment
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200 hsa04714 Thermogenesis
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201 hsa04720 Long-term potentiation
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202 hsa04721 Synaptic vesicle cycle
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203 hsa04722 Neurotrophin signaling pathway
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204 hsa04723 Retrograde endocannabinoid signaling
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205 hsa04724 Glutamatergic synapse
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206 hsa04725 Cholinergic synapse
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207 hsa04726 Serotonergic synapse
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208 hsa04727 GABAergic synapse
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209 hsa04728 Dopaminergic synapse
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210 hsa04730 Long-term depression
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211 hsa04740 Olfactory transduction
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212 hsa04742 Taste transduction
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213 hsa04744 Phototransduction
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214 hsa04750 Inflammatory mediator regulation of TRP channels
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215 hsa04810 Regulation of actin cytoskeleton
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216 hsa04910 Insulin signaling pathway
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217 hsa04911 Insulin secretion
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218 hsa04912 GnRH signaling pathway
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219 hsa04913 Ovarian steroidogenesis
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220 hsa04914 Progesterone-mediated oocyte maturation
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221 hsa04915 Estrogen signaling pathway
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222 hsa04916 Melanogenesis
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223 hsa04917 Prolactin signaling pathway
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224 hsa04918 Thyroid hormone synthesis
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225 hsa04919 Thyroid hormone signaling pathway
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226 hsa04920 Adipocytokine signaling pathway
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227 hsa04921 Oxytocin signaling pathway
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228 hsa04922 Glucagon signaling pathway
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229 hsa04923 Regulation of lipolysis in adipocytes
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230 hsa04924 Renin secretion
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231 hsa04925 Aldosterone synthesis and secretion
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232 hsa04926 Relaxin signaling pathway
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233 hsa04927 Cortisol synthesis and secretion
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234 hsa04928 Parathyroid hormone synthesis, secretion and action
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235 hsa04930 Type II diabetes mellitus
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236 hsa04931 Insulin resistance
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237 hsa04932 Non-alcoholic fatty liver disease (NAFLD)
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238 hsa04933 AGE-RAGE signaling pathway in diabetic complications
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239 hsa04934 Cushing's syndrome
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240 hsa04940 Type I diabetes mellitus
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241 hsa04950 Maturity onset diabetes of the young
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242 hsa04960 Aldosterone-regulated sodium reabsorption
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243 hsa04961 Endocrine and other factor-regulated calcium reabsorption
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244 hsa04962 Vasopressin-regulated water reabsorption
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245 hsa04964 Proximal tubule bicarbonate reclamation
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246 hsa04966 Collecting duct acid secretion
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247 hsa04970 Salivary secretion
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248 hsa04971 Gastric acid secretion
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249 hsa04972 Pancreatic secretion
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250 hsa04973 Carbohydrate digestion and absorption
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251 hsa04974 Protein digestion and absorption
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252 hsa04975 Fat digestion and absorption
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253 hsa04976 Bile secretion
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parents:
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254 hsa04977 Vitamin digestion and absorption
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255 hsa04978 Mineral absorption
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parents:
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256 hsa04979 Cholesterol metabolism
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parents:
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257 hsa05010 Alzheimer's disease
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parents:
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258 hsa05012 Parkinson's disease
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parents:
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259 hsa05014 Amyotrophic lateral sclerosis (ALS)
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parents:
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260 hsa05016 Huntington's disease
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parents:
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261 hsa05020 Prion diseases
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parents:
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262 hsa05030 Cocaine addiction
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parents:
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263 hsa05031 Amphetamine addiction
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264 hsa05032 Morphine addiction
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265 hsa05033 Nicotine addiction
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266 hsa05034 Alcoholism
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267 hsa05100 Bacterial invasion of epithelial cells
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268 hsa05110 Vibrio cholerae infection
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269 hsa05120 Epithelial cell signaling in Helicobacter pylori infection
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270 hsa05130 Pathogenic Escherichia coli infection
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271 hsa05131 Shigellosis
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272 hsa05132 Salmonella infection
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273 hsa05133 Pertussis
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274 hsa05134 Legionellosis
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275 hsa05140 Leishmaniasis
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276 hsa05142 Chagas disease (American trypanosomiasis)
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277 hsa05143 African trypanosomiasis
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278 hsa05144 Malaria
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279 hsa05145 Toxoplasmosis
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280 hsa05146 Amoebiasis
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281 hsa05150 Staphylococcus aureus infection
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282 hsa05152 Tuberculosis
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parents:
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283 hsa05160 Hepatitis C
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284 hsa05161 Hepatitis B
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285 hsa05162 Measles
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parents:
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286 hsa05163 Human cytomegalovirus infection
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287 hsa05164 Influenza A
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parents:
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288 hsa05165 Human papillomavirus infection
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289 hsa05166 HTLV-I infection
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290 hsa05167 Kaposi's sarcoma-associated herpesvirus infection
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291 hsa05168 Herpes simplex infection
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292 hsa05169 Epstein-Barr virus infection
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293 hsa05200 Pathways in cancer
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294 hsa05202 Transcriptional misregulation in cancer
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295 hsa05203 Viral carcinogenesis
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296 hsa05204 Chemical carcinogenesis
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297 hsa05205 Proteoglycans in cancer
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298 hsa05206 MicroRNAs in cancer
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299 hsa05210 Colorectal cancer
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300 hsa05211 Renal cell carcinoma
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301 hsa05212 Pancreatic cancer
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302 hsa05213 Endometrial cancer
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303 hsa05214 Glioma
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304 hsa05215 Prostate cancer
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305 hsa05216 Thyroid cancer
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306 hsa05217 Basal cell carcinoma
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307 hsa05218 Melanoma
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308 hsa05219 Bladder cancer
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309 hsa05220 Chronic myeloid leukemia
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310 hsa05221 Acute myeloid leukemia
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311 hsa05222 Small cell lung cancer
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312 hsa05223 Non-small cell lung cancer
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313 hsa05224 Breast cancer
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314 hsa05225 Hepatocellular carcinoma
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315 hsa05226 Gastric cancer
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316 hsa05230 Central carbon metabolism in cancer
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317 hsa05231 Choline metabolism in cancer
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318 hsa05310 Asthma
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319 hsa05320 Autoimmune thyroid disease
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320 hsa05321 Inflammatory bowel disease (IBD)
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321 hsa05322 Systemic lupus erythematosus
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322 hsa05323 Rheumatoid arthritis
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323 hsa05330 Allograft rejection
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324 hsa05332 Graft-versus-host disease
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325 hsa05340 Primary immunodeficiency
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326 hsa05410 Hypertrophic cardiomyopathy (HCM)
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327 hsa05412 Arrhythmogenic right ventricular cardiomyopathy (ARVC)
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328 hsa05414 Dilated cardiomyopathy (DCM)
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329 hsa05416 Viral myocarditis
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330 hsa05418 Fluid shear stress and atherosclerosis