Mercurial > repos > proteore > proteore_maps_visualization

comparison kegg_maps_visualization.xml @ 4:8e611bdc96ec draft

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"planemo upload commit 6bef056b0e52bfa39dbe8591bfe67f8c95bf3ba2-dirty"
author proteore
date Wed, 15 Jan 2020 11:31:03 -0500
parents dfceadc0b703
children 4a3056be0774
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3:dfceadc0b703 4:8e611bdc96ec
1 <tool id="kegg_maps_visualization" name="Pathways visualization" version="2019.06.27.1"> 1 <tool id="kegg_maps_visualization" name="Pathways visualization" version="2020.01.08">
2 <description>of (differentially expressed) genes/proteins [KEGG]</description> 2 <description>of (differentially expressed) genes/proteins [KEGG]</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.18.0">bioconductor-pathview</requirement> 4 <requirement type="package" version="3.6.2" >R</requirement>
5 <requirement type="package" version="1.18.0">bioconductor-keggrest</requirement> 5 <requirement type="package" version="1.26.0">bioconductor-pathview</requirement>
6 <requirement type="package" version="1.26.0">bioconductor-keggrest</requirement>
6 </requirements> 7 </requirements>
7 <command detect_errors="exit_code"><![CDATA[ 8 <command detect_errors="exit_code"><![CDATA[
8 Rscript $__tool_directory__/kegg_maps_visualization.R 9 Rscript $__tool_directory__/kegg_maps_visualization.R
9 #if $input.ids == "text" 10 #if $input.ids == "text"
10 --id_list="$input.txt" 11 --id_list="$input.txt"