Mercurial > repos > proteore > proteore_maps_visualization
comparison tool-data/hsa_pathways.loc.sample @ 0:9845dc9c7323 draft
planemo upload commit ad5f1c5a1a71d7fa2bc8bac408856aa80b0fc2a3
| author | proteore |
|---|---|
| date | Tue, 18 Dec 2018 10:02:54 -0500 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:9845dc9c7323 |
|---|---|
| 1 #value name | |
| 2 hsa00010 Glycolysis / Gluconeogenesis | |
| 3 hsa00020 Citrate cycle (TCA cycle) | |
| 4 hsa00030 Pentose phosphate pathway | |
| 5 hsa00040 Pentose and glucuronate interconversions | |
| 6 hsa00051 Fructose and mannose metabolism | |
| 7 hsa00052 Galactose metabolism | |
| 8 hsa00053 Ascorbate and aldarate metabolism | |
| 9 hsa00061 Fatty acid biosynthesis | |
| 10 hsa00062 Fatty acid elongation | |
| 11 hsa00071 Fatty acid degradation | |
| 12 hsa00072 Synthesis and degradation of ketone bodies | |
| 13 hsa00100 Steroid biosynthesis | |
| 14 hsa00120 Primary bile acid biosynthesis | |
| 15 hsa00130 Ubiquinone and other terpenoid-quinone biosynthesis | |
| 16 hsa00140 Steroid hormone biosynthesis | |
| 17 hsa00190 Oxidative phosphorylation | |
| 18 hsa00220 Arginine biosynthesis | |
| 19 hsa00230 Purine metabolism | |
| 20 hsa00232 Caffeine metabolism | |
| 21 hsa00240 Pyrimidine metabolism | |
| 22 hsa00250 Alanine, aspartate and glutamate metabolism | |
| 23 hsa00260 Glycine, serine and threonine metabolism | |
| 24 hsa00270 Cysteine and methionine metabolism | |
| 25 hsa00280 Valine, leucine and isoleucine degradation | |
| 26 hsa00290 Valine, leucine and isoleucine biosynthesis | |
| 27 hsa00310 Lysine degradation | |
| 28 hsa00330 Arginine and proline metabolism | |
| 29 hsa00340 Histidine metabolism | |
| 30 hsa00350 Tyrosine metabolism | |
| 31 hsa00360 Phenylalanine metabolism | |
| 32 hsa00380 Tryptophan metabolism | |
| 33 hsa00400 Phenylalanine, tyrosine and tryptophan biosynthesis | |
| 34 hsa00410 beta-Alanine metabolism | |
| 35 hsa00430 Taurine and hypotaurine metabolism | |
| 36 hsa00440 Phosphonate and phosphinate metabolism | |
| 37 hsa00450 Selenocompound metabolism | |
| 38 hsa00471 D-Glutamine and D-glutamate metabolism | |
| 39 hsa00472 D-Arginine and D-ornithine metabolism | |
| 40 hsa00480 Glutathione metabolism | |
| 41 hsa00500 Starch and sucrose metabolism | |
| 42 hsa00510 N-Glycan biosynthesis | |
| 43 hsa00511 Other glycan degradation | |
| 44 hsa00512 Mucin type O-glycan biosynthesis | |
| 45 hsa00514 Other types of O-glycan biosynthesis | |
| 46 hsa00515 Mannose type O-glycan biosynthesis | |
| 47 hsa00520 Amino sugar and nucleotide sugar metabolism | |
| 48 hsa00524 Neomycin, kanamycin and gentamicin biosynthesis | |
| 49 hsa00531 Glycosaminoglycan degradation | |
| 50 hsa00532 Glycosaminoglycan biosynthesis | |
| 51 hsa00533 Glycosaminoglycan biosynthesis | |
| 52 hsa00534 Glycosaminoglycan biosynthesis | |
| 53 hsa00561 Glycerolipid metabolism | |
| 54 hsa00562 Inositol phosphate metabolism | |
| 55 hsa00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis | |
| 56 hsa00564 Glycerophospholipid metabolism | |
| 57 hsa00565 Ether lipid metabolism | |
| 58 hsa00590 Arachidonic acid metabolism | |
| 59 hsa00591 Linoleic acid metabolism | |
| 60 hsa00592 alpha-Linolenic acid metabolism | |
| 61 hsa00600 Sphingolipid metabolism | |
| 62 hsa00601 Glycosphingolipid biosynthesis | |
| 63 hsa00603 Glycosphingolipid biosynthesis | |
| 64 hsa00604 Glycosphingolipid biosynthesis | |
| 65 hsa00620 Pyruvate metabolism | |
| 66 hsa00630 Glyoxylate and dicarboxylate metabolism | |
| 67 hsa00640 Propanoate metabolism | |
| 68 hsa00650 Butanoate metabolism | |
| 69 hsa00670 One carbon pool by folate | |
| 70 hsa00730 Thiamine metabolism | |
| 71 hsa00740 Riboflavin metabolism | |
| 72 hsa00750 Vitamin B6 metabolism | |
| 73 hsa00760 Nicotinate and nicotinamide metabolism | |
| 74 hsa00770 Pantothenate and CoA biosynthesis | |
| 75 hsa00780 Biotin metabolism | |
| 76 hsa00785 Lipoic acid metabolism | |
| 77 hsa00790 Folate biosynthesis | |
| 78 hsa00830 Retinol metabolism | |
| 79 hsa00860 Porphyrin and chlorophyll metabolism | |
| 80 hsa00900 Terpenoid backbone biosynthesis | |
| 81 hsa00910 Nitrogen metabolism | |
| 82 hsa00920 Sulfur metabolism | |
| 83 hsa00970 Aminoacyl-tRNA biosynthesis | |
| 84 hsa00980 Metabolism of xenobiotics by cytochrome P450 | |
| 85 hsa00982 Drug metabolism | |
| 86 hsa00983 Drug metabolism | |
| 87 hsa01040 Biosynthesis of unsaturated fatty acids | |
| 88 hsa01100 Metabolic pathways | |
| 89 hsa01200 Carbon metabolism | |
| 90 hsa01210 2-Oxocarboxylic acid metabolism | |
| 91 hsa01212 Fatty acid metabolism | |
| 92 hsa01230 Biosynthesis of amino acids | |
| 93 hsa01521 EGFR tyrosine kinase inhibitor resistance | |
| 94 hsa01522 Endocrine resistance | |
| 95 hsa01523 Antifolate resistance | |
| 96 hsa01524 Platinum drug resistance | |
| 97 hsa02010 ABC transporters | |
| 98 hsa03008 Ribosome biogenesis in eukaryotes | |
| 99 hsa03010 Ribosome | |
| 100 hsa03013 RNA transport | |
| 101 hsa03015 mRNA surveillance pathway | |
| 102 hsa03018 RNA degradation | |
| 103 hsa03020 RNA polymerase | |
| 104 hsa03022 Basal transcription factors | |
| 105 hsa03030 DNA replication | |
| 106 hsa03040 Spliceosome | |
| 107 hsa03050 Proteasome | |
| 108 hsa03060 Protein export | |
| 109 hsa03320 PPAR signaling pathway | |
| 110 hsa03410 Base excision repair | |
| 111 hsa03420 Nucleotide excision repair | |
| 112 hsa03430 Mismatch repair | |
| 113 hsa03440 Homologous recombination | |
| 114 hsa03450 Non-homologous end-joining | |
| 115 hsa03460 Fanconi anemia pathway | |
| 116 hsa04010 MAPK signaling pathway | |
| 117 hsa04012 ErbB signaling pathway | |
| 118 hsa04014 Ras signaling pathway | |
| 119 hsa04015 Rap1 signaling pathway | |
| 120 hsa04020 Calcium signaling pathway | |
| 121 hsa04022 cGMP-PKG signaling pathway | |
| 122 hsa04024 cAMP signaling pathway | |
| 123 hsa04060 Cytokine-cytokine receptor interaction | |
| 124 hsa04062 Chemokine signaling pathway | |
| 125 hsa04064 NF-kappa B signaling pathway | |
| 126 hsa04066 HIF-1 signaling pathway | |
| 127 hsa04068 FoxO signaling pathway | |
| 128 hsa04070 Phosphatidylinositol signaling system | |
| 129 hsa04071 Sphingolipid signaling pathway | |
| 130 hsa04072 Phospholipase D signaling pathway | |
| 131 hsa04080 Neuroactive ligand-receptor interaction | |
| 132 hsa04110 Cell cycle | |
| 133 hsa04114 Oocyte meiosis | |
| 134 hsa04115 p53 signaling pathway | |
| 135 hsa04120 Ubiquitin mediated proteolysis | |
| 136 hsa04122 Sulfur relay system | |
| 137 hsa04130 SNARE interactions in vesicular transport | |
| 138 hsa04136 Autophagy | |
| 139 hsa04137 Mitophagy | |
| 140 hsa04140 Autophagy | |
| 141 hsa04141 Protein processing in endoplasmic reticulum | |
| 142 hsa04142 Lysosome | |
| 143 hsa04144 Endocytosis | |
| 144 hsa04145 Phagosome | |
| 145 hsa04146 Peroxisome | |
| 146 hsa04150 mTOR signaling pathway | |
| 147 hsa04151 PI3K-Akt signaling pathway | |
| 148 hsa04152 AMPK signaling pathway | |
| 149 hsa04210 Apoptosis | |
| 150 hsa04211 Longevity regulating pathway | |
| 151 hsa04213 Longevity regulating pathway | |
| 152 hsa04215 Apoptosis | |
| 153 hsa04216 Ferroptosis | |
| 154 hsa04217 Necroptosis | |
| 155 hsa04218 Cellular senescence | |
| 156 hsa04260 Cardiac muscle contraction | |
| 157 hsa04261 Adrenergic signaling in cardiomyocytes | |
| 158 hsa04270 Vascular smooth muscle contraction | |
| 159 hsa04310 Wnt signaling pathway | |
| 160 hsa04330 Notch signaling pathway | |
| 161 hsa04340 Hedgehog signaling pathway | |
| 162 hsa04350 TGF-beta signaling pathway | |
| 163 hsa04360 Axon guidance | |
| 164 hsa04370 VEGF signaling pathway | |
| 165 hsa04371 Apelin signaling pathway | |
| 166 hsa04380 Osteoclast differentiation | |
| 167 hsa04390 Hippo signaling pathway | |
| 168 hsa04392 Hippo signaling pathway | |
| 169 hsa04510 Focal adhesion | |
| 170 hsa04512 ECM-receptor interaction | |
| 171 hsa04514 Cell adhesion molecules (CAMs) | |
| 172 hsa04520 Adherens junction | |
| 173 hsa04530 Tight junction | |
| 174 hsa04540 Gap junction | |
| 175 hsa04550 Signaling pathways regulating pluripotency of stem cells | |
| 176 hsa04610 Complement and coagulation cascades | |
| 177 hsa04611 Platelet activation | |
| 178 hsa04612 Antigen processing and presentation | |
| 179 hsa04614 Renin-angiotensin system | |
| 180 hsa04620 Toll-like receptor signaling pathway | |
| 181 hsa04621 NOD-like receptor signaling pathway | |
| 182 hsa04622 RIG-I-like receptor signaling pathway | |
| 183 hsa04623 Cytosolic DNA-sensing pathway | |
| 184 hsa04625 C-type lectin receptor signaling pathway | |
| 185 hsa04630 Jak-STAT signaling pathway | |
| 186 hsa04640 Hematopoietic cell lineage | |
| 187 hsa04650 Natural killer cell mediated cytotoxicity | |
| 188 hsa04657 IL-17 signaling pathway | |
| 189 hsa04658 Th1 and Th2 cell differentiation | |
| 190 hsa04659 Th17 cell differentiation | |
| 191 hsa04660 T cell receptor signaling pathway | |
| 192 hsa04662 B cell receptor signaling pathway | |
| 193 hsa04664 Fc epsilon RI signaling pathway | |
| 194 hsa04666 Fc gamma R-mediated phagocytosis | |
| 195 hsa04668 TNF signaling pathway | |
| 196 hsa04670 Leukocyte transendothelial migration | |
| 197 hsa04672 Intestinal immune network for IgA production | |
| 198 hsa04710 Circadian rhythm | |
| 199 hsa04713 Circadian entrainment | |
| 200 hsa04714 Thermogenesis | |
| 201 hsa04720 Long-term potentiation | |
| 202 hsa04721 Synaptic vesicle cycle | |
| 203 hsa04722 Neurotrophin signaling pathway | |
| 204 hsa04723 Retrograde endocannabinoid signaling | |
| 205 hsa04724 Glutamatergic synapse | |
| 206 hsa04725 Cholinergic synapse | |
| 207 hsa04726 Serotonergic synapse | |
| 208 hsa04727 GABAergic synapse | |
| 209 hsa04728 Dopaminergic synapse | |
| 210 hsa04730 Long-term depression | |
| 211 hsa04740 Olfactory transduction | |
| 212 hsa04742 Taste transduction | |
| 213 hsa04744 Phototransduction | |
| 214 hsa04750 Inflammatory mediator regulation of TRP channels | |
| 215 hsa04810 Regulation of actin cytoskeleton | |
| 216 hsa04910 Insulin signaling pathway | |
| 217 hsa04911 Insulin secretion | |
| 218 hsa04912 GnRH signaling pathway | |
| 219 hsa04913 Ovarian steroidogenesis | |
| 220 hsa04914 Progesterone-mediated oocyte maturation | |
| 221 hsa04915 Estrogen signaling pathway | |
| 222 hsa04916 Melanogenesis | |
| 223 hsa04917 Prolactin signaling pathway | |
| 224 hsa04918 Thyroid hormone synthesis | |
| 225 hsa04919 Thyroid hormone signaling pathway | |
| 226 hsa04920 Adipocytokine signaling pathway | |
| 227 hsa04921 Oxytocin signaling pathway | |
| 228 hsa04922 Glucagon signaling pathway | |
| 229 hsa04923 Regulation of lipolysis in adipocytes | |
| 230 hsa04924 Renin secretion | |
| 231 hsa04925 Aldosterone synthesis and secretion | |
| 232 hsa04926 Relaxin signaling pathway | |
| 233 hsa04927 Cortisol synthesis and secretion | |
| 234 hsa04928 Parathyroid hormone synthesis, secretion and action | |
| 235 hsa04930 Type II diabetes mellitus | |
| 236 hsa04931 Insulin resistance | |
| 237 hsa04932 Non-alcoholic fatty liver disease (NAFLD) | |
| 238 hsa04933 AGE-RAGE signaling pathway in diabetic complications | |
| 239 hsa04934 Cushing's syndrome | |
| 240 hsa04940 Type I diabetes mellitus | |
| 241 hsa04950 Maturity onset diabetes of the young | |
| 242 hsa04960 Aldosterone-regulated sodium reabsorption | |
| 243 hsa04961 Endocrine and other factor-regulated calcium reabsorption | |
| 244 hsa04962 Vasopressin-regulated water reabsorption | |
| 245 hsa04964 Proximal tubule bicarbonate reclamation | |
| 246 hsa04966 Collecting duct acid secretion | |
| 247 hsa04970 Salivary secretion | |
| 248 hsa04971 Gastric acid secretion | |
| 249 hsa04972 Pancreatic secretion | |
| 250 hsa04973 Carbohydrate digestion and absorption | |
| 251 hsa04974 Protein digestion and absorption | |
| 252 hsa04975 Fat digestion and absorption | |
| 253 hsa04976 Bile secretion | |
| 254 hsa04977 Vitamin digestion and absorption | |
| 255 hsa04978 Mineral absorption | |
| 256 hsa04979 Cholesterol metabolism | |
| 257 hsa05010 Alzheimer's disease | |
| 258 hsa05012 Parkinson's disease | |
| 259 hsa05014 Amyotrophic lateral sclerosis (ALS) | |
| 260 hsa05016 Huntington's disease | |
| 261 hsa05020 Prion diseases | |
| 262 hsa05030 Cocaine addiction | |
| 263 hsa05031 Amphetamine addiction | |
| 264 hsa05032 Morphine addiction | |
| 265 hsa05033 Nicotine addiction | |
| 266 hsa05034 Alcoholism | |
| 267 hsa05100 Bacterial invasion of epithelial cells | |
| 268 hsa05110 Vibrio cholerae infection | |
| 269 hsa05120 Epithelial cell signaling in Helicobacter pylori infection | |
| 270 hsa05130 Pathogenic Escherichia coli infection | |
| 271 hsa05131 Shigellosis | |
| 272 hsa05132 Salmonella infection | |
| 273 hsa05133 Pertussis | |
| 274 hsa05134 Legionellosis | |
| 275 hsa05140 Leishmaniasis | |
| 276 hsa05142 Chagas disease (American trypanosomiasis) | |
| 277 hsa05143 African trypanosomiasis | |
| 278 hsa05144 Malaria | |
| 279 hsa05145 Toxoplasmosis | |
| 280 hsa05146 Amoebiasis | |
| 281 hsa05150 Staphylococcus aureus infection | |
| 282 hsa05152 Tuberculosis | |
| 283 hsa05160 Hepatitis C | |
| 284 hsa05161 Hepatitis B | |
| 285 hsa05162 Measles | |
| 286 hsa05163 Human cytomegalovirus infection | |
| 287 hsa05164 Influenza A | |
| 288 hsa05165 Human papillomavirus infection | |
| 289 hsa05166 HTLV-I infection | |
| 290 hsa05167 Kaposi's sarcoma-associated herpesvirus infection | |
| 291 hsa05168 Herpes simplex infection | |
| 292 hsa05169 Epstein-Barr virus infection | |
| 293 hsa05200 Pathways in cancer | |
| 294 hsa05202 Transcriptional misregulation in cancer | |
| 295 hsa05203 Viral carcinogenesis | |
| 296 hsa05204 Chemical carcinogenesis | |
| 297 hsa05205 Proteoglycans in cancer | |
| 298 hsa05206 MicroRNAs in cancer | |
| 299 hsa05210 Colorectal cancer | |
| 300 hsa05211 Renal cell carcinoma | |
| 301 hsa05212 Pancreatic cancer | |
| 302 hsa05213 Endometrial cancer | |
| 303 hsa05214 Glioma | |
| 304 hsa05215 Prostate cancer | |
| 305 hsa05216 Thyroid cancer | |
| 306 hsa05217 Basal cell carcinoma | |
| 307 hsa05218 Melanoma | |
| 308 hsa05219 Bladder cancer | |
| 309 hsa05220 Chronic myeloid leukemia | |
| 310 hsa05221 Acute myeloid leukemia | |
| 311 hsa05222 Small cell lung cancer | |
| 312 hsa05223 Non-small cell lung cancer | |
| 313 hsa05224 Breast cancer | |
| 314 hsa05225 Hepatocellular carcinoma | |
| 315 hsa05226 Gastric cancer | |
| 316 hsa05230 Central carbon metabolism in cancer | |
| 317 hsa05231 Choline metabolism in cancer | |
| 318 hsa05310 Asthma | |
| 319 hsa05320 Autoimmune thyroid disease | |
| 320 hsa05321 Inflammatory bowel disease (IBD) | |
| 321 hsa05322 Systemic lupus erythematosus | |
| 322 hsa05323 Rheumatoid arthritis | |
| 323 hsa05330 Allograft rejection | |
| 324 hsa05332 Graft-versus-host disease | |
| 325 hsa05340 Primary immunodeficiency | |
| 326 hsa05410 Hypertrophic cardiomyopathy (HCM) | |
| 327 hsa05412 Arrhythmogenic right ventricular cardiomyopathy (ARVC) | |
| 328 hsa05414 Dilated cardiomyopathy (DCM) | |
| 329 hsa05416 Viral myocarditis | |
| 330 hsa05418 Fluid shear stress and atherosclerosis |