Mercurial > repos > proteore > proteore_maps_visualization
comparison kegg_maps_visualization.R @ 3:dfceadc0b703 draft
planemo upload commit 4ba1ebe7b3f5e3fabf78b5fed7ed0b92e2cbf9e5-dirty
author | proteore |
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date | Fri, 28 Jun 2019 05:16:30 -0400 |
parents | 6f389729a30b |
children | 8e611bdc96ec |
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2:6ca99419207d | 3:dfceadc0b703 |
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73 string <- gsub("X","",string) | 73 string <- gsub("X","",string) |
74 return(string) | 74 return(string) |
75 } | 75 } |
76 | 76 |
77 get_list_from_cp <-function(list){ | 77 get_list_from_cp <-function(list){ |
78 list = gsub(";","\t",list) | |
78 list = gsub(",","\t",list) | 79 list = gsub(",","\t",list) |
79 list = strsplit(list, "[ \t\n]+")[[1]] | 80 list = strsplit(list, "[ \t\n]+")[[1]] |
80 list = list[list != ""] #remove empty entry | 81 list = list[list != ""] #remove empty entry |
81 list = gsub("-.+", "", list) #Remove isoform accession number (e.g. "-2") | 82 list = gsub("-.+", "", list) #Remove isoform accession number (e.g. "-2") |
82 return(list) | 83 return(list) |