Mercurial > repos > proteore > proteore_maps_visualization
view tool-data/rno_pathways.loc.sample @ 5:4a3056be0774 draft
planemo upload commit b8671ffe2e12dc6612b971a3e6e1dc71496aefd0
| author | proteore |
|---|---|
| date | Fri, 24 Jan 2020 05:20:10 -0500 |
| parents | 9845dc9c7323 |
| children |
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rno00010 Glycolysis / Gluconeogenesis rno00020 Citrate cycle (TCA cycle) rno00030 Pentose phosphate pathway rno00040 Pentose and glucuronate interconversions rno00051 Fructose and mannose metabolism rno00052 Galactose metabolism rno00053 Ascorbate and aldarate metabolism rno00061 Fatty acid biosynthesis rno00062 Fatty acid elongation rno00071 Fatty acid degradation rno00072 Synthesis and degradation of ketone bodies rno00100 Steroid biosynthesis rno00120 Primary bile acid biosynthesis rno00130 Ubiquinone and other terpenoid-quinone biosynthesis rno00140 Steroid hormone biosynthesis rno00190 Oxidative phosphorylation rno00220 Arginine biosynthesis rno00230 Purine metabolism rno00232 Caffeine metabolism rno00240 Pyrimidine metabolism rno00250 Alanine, aspartate and glutamate metabolism rno00260 Glycine, serine and threonine metabolism rno00270 Cysteine and methionine metabolism rno00280 Valine, leucine and isoleucine degradation rno00290 Valine, leucine and isoleucine biosynthesis rno00310 Lysine degradation rno00330 Arginine and proline metabolism rno00340 Histidine metabolism rno00350 Tyrosine metabolism rno00360 Phenylalanine metabolism rno00380 Tryptophan metabolism rno00400 Phenylalanine, tyrosine and tryptophan biosynthesis rno00410 beta-Alanine metabolism rno00430 Taurine and hypotaurine metabolism rno00440 Phosphonate and phosphinate metabolism rno00450 Selenocompound metabolism rno00471 D-Glutamine and D-glutamate metabolism rno00472 D-Arginine and D-ornithine metabolism rno00480 Glutathione metabolism rno00500 Starch and sucrose metabolism rno00510 N-Glycan biosynthesis rno00511 Other glycan degradation rno00512 Mucin type O-glycan biosynthesis rno00514 Other types of O-glycan biosynthesis rno00515 Mannose type O-glycan biosynthesis rno00520 Amino sugar and nucleotide sugar metabolism rno00524 Neomycin, kanamycin and gentamicin biosynthesis rno00531 Glycosaminoglycan degradation rno00532 Glycosaminoglycan biosynthesis rno00533 Glycosaminoglycan biosynthesis rno00534 Glycosaminoglycan biosynthesis rno00561 Glycerolipid metabolism rno00562 Inositol phosphate metabolism rno00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis rno00564 Glycerophospholipid metabolism rno00565 Ether lipid metabolism rno00590 Arachidonic acid metabolism rno00591 Linoleic acid metabolism rno00592 alpha-Linolenic acid metabolism rno00600 Sphingolipid metabolism rno00601 Glycosphingolipid biosynthesis rno00603 Glycosphingolipid biosynthesis rno00604 Glycosphingolipid biosynthesis rno00620 Pyruvate metabolism rno00630 Glyoxylate and dicarboxylate metabolism rno00640 Propanoate metabolism rno00650 Butanoate metabolism rno00670 One carbon pool by folate rno00730 Thiamine metabolism rno00740 Riboflavin metabolism rno00750 Vitamin B6 metabolism rno00760 Nicotinate and nicotinamide metabolism rno00770 Pantothenate and CoA biosynthesis rno00780 Biotin metabolism rno00785 Lipoic acid metabolism rno00790 Folate biosynthesis rno00830 Retinol metabolism rno00860 Porphyrin and chlorophyll metabolism rno00900 Terpenoid backbone biosynthesis rno00910 Nitrogen metabolism rno00920 Sulfur metabolism rno00970 Aminoacyl-tRNA biosynthesis rno00980 Metabolism of xenobiotics by cytochrome P450 rno00982 Drug metabolism rno00983 Drug metabolism rno01040 Biosynthesis of unsaturated fatty acids rno01100 Metabolic pathways rno01200 Carbon metabolism rno01210 2-Oxocarboxylic acid metabolism rno01212 Fatty acid metabolism rno01230 Biosynthesis of amino acids rno01521 EGFR tyrosine kinase inhibitor resistance rno01522 Endocrine resistance rno01523 Antifolate resistance rno01524 Platinum drug resistance rno02010 ABC transporters rno03008 Ribosome biogenesis in eukaryotes rno03010 Ribosome rno03013 RNA transport rno03015 mRNA surveillance pathway rno03018 RNA degradation rno03020 RNA polymerase rno03022 Basal transcription factors rno03030 DNA replication rno03040 Spliceosome rno03050 Proteasome rno03060 Protein export rno03320 PPAR signaling pathway rno03410 Base excision repair rno03420 Nucleotide excision repair rno03430 Mismatch repair rno03440 Homologous recombination rno03450 Non-homologous end-joining rno03460 Fanconi anemia pathway rno04010 MAPK signaling pathway rno04012 ErbB signaling pathway rno04014 Ras signaling pathway rno04015 Rap1 signaling pathway rno04020 Calcium signaling pathway rno04022 cGMP-PKG signaling pathway rno04024 cAMP signaling pathway rno04060 Cytokine-cytokine receptor interaction rno04062 Chemokine signaling pathway rno04064 NF-kappa B signaling pathway rno04066 HIF-1 signaling pathway rno04068 FoxO signaling pathway rno04070 Phosphatidylinositol signaling system rno04071 Sphingolipid signaling pathway rno04072 Phospholipase D signaling pathway rno04080 Neuroactive ligand-receptor interaction rno04110 Cell cycle rno04114 Oocyte meiosis rno04115 p53 signaling pathway rno04120 Ubiquitin mediated proteolysis rno04122 Sulfur relay system rno04130 SNARE interactions in vesicular transport rno04136 Autophagy rno04137 Mitophagy rno04140 Autophagy rno04141 Protein processing in endoplasmic reticulum rno04142 Lysosome rno04144 Endocytosis rno04145 Phagosome rno04146 Peroxisome rno04150 mTOR signaling pathway rno04151 PI3K-Akt signaling pathway rno04152 AMPK signaling pathway rno04210 Apoptosis rno04211 Longevity regulating pathway rno04213 Longevity regulating pathway rno04215 Apoptosis rno04216 Ferroptosis rno04217 Necroptosis rno04218 Cellular senescence rno04260 Cardiac muscle contraction rno04261 Adrenergic signaling in cardiomyocytes rno04270 Vascular smooth muscle contraction rno04310 Wnt signaling pathway rno04330 Notch signaling pathway rno04340 Hedgehog signaling pathway rno04350 TGF-beta signaling pathway rno04360 Axon guidance rno04370 VEGF signaling pathway rno04371 Apelin signaling pathway rno04380 Osteoclast differentiation rno04390 Hippo signaling pathway rno04392 Hippo signaling pathway rno04510 Focal adhesion rno04512 ECM-receptor interaction rno04514 Cell adhesion molecules (CAMs) rno04520 Adherens junction rno04530 Tight junction rno04540 Gap junction rno04550 Signaling pathways regulating pluripotency of stem cells rno04610 Complement and coagulation cascades rno04611 Platelet activation rno04612 Antigen processing and presentation rno04614 Renin-angiotensin system rno04620 Toll-like receptor signaling pathway rno04621 NOD-like receptor signaling pathway rno04622 RIG-I-like receptor signaling pathway rno04623 Cytosolic DNA-sensing pathway rno04625 C-type lectin receptor signaling pathway rno04630 JAK-STAT signaling pathway rno04640 Hematopoietic cell lineage rno04650 Natural killer cell mediated cytotoxicity rno04657 IL-17 signaling pathway rno04658 Th1 and Th2 cell differentiation rno04659 Th17 cell differentiation rno04660 T cell receptor signaling pathway rno04662 B cell receptor signaling pathway rno04664 Fc epsilon RI signaling pathway rno04666 Fc gamma R-mediated phagocytosis rno04668 TNF signaling pathway rno04670 Leukocyte transendothelial migration rno04672 Intestinal immune network for IgA production rno04710 Circadian rhythm rno04713 Circadian entrainment rno04714 Thermogenesis rno04720 Long-term potentiation rno04721 Synaptic vesicle cycle rno04722 Neurotrophin signaling pathway rno04723 Retrograde endocannabinoid signaling rno04724 Glutamatergic synapse rno04725 Cholinergic synapse rno04726 Serotonergic synapse rno04727 GABAergic synapse rno04728 Dopaminergic synapse rno04730 Long-term depression rno04740 Olfactory transduction rno04742 Taste transduction rno04744 Phototransduction rno04750 Inflammatory mediator regulation of TRP channels rno04810 Regulation of actin cytoskeleton rno04910 Insulin signaling pathway rno04911 Insulin secretion rno04912 GnRH signaling pathway rno04913 Ovarian steroidogenesis rno04914 Progesterone-mediated oocyte maturation rno04915 Estrogen signaling pathway rno04916 Melanogenesis rno04917 Prolactin signaling pathway rno04918 Thyroid hormone synthesis rno04919 Thyroid hormone signaling pathway rno04920 Adipocytokine signaling pathway rno04921 Oxytocin signaling pathway rno04922 Glucagon signaling pathway rno04923 Regulation of lipolysis in adipocytes rno04924 Renin secretion rno04925 Aldosterone synthesis and secretion rno04926 Relaxin signaling pathway rno04927 Cortisol synthesis and secretion rno04928 Parathyroid hormone synthesis, secretion and action rno04930 Type II diabetes mellitus rno04931 Insulin resistance rno04932 Non-alcoholic fatty liver disease (NAFLD) rno04933 AGE-RAGE signaling pathway in diabetic complications rno04934 Cushing syndrome rno04940 Type I diabetes mellitus rno04950 Maturity onset diabetes of the young rno04960 Aldosterone-regulated sodium reabsorption rno04961 Endocrine and other factor-regulated calcium reabsorption rno04962 Vasopressin-regulated water reabsorption rno04964 Proximal tubule bicarbonate reclamation rno04966 Collecting duct acid secretion rno04970 Salivary secretion rno04971 Gastric acid secretion rno04972 Pancreatic secretion rno04973 Carbohydrate digestion and absorption rno04974 Protein digestion and absorption rno04975 Fat digestion and absorption rno04976 Bile secretion rno04977 Vitamin digestion and absorption rno04978 Mineral absorption rno04979 Cholesterol metabolism rno05010 Alzheimer disease rno05012 Parkinson disease rno05014 Amyotrophic lateral sclerosis (ALS) rno05016 Huntington disease rno05020 Prion diseases rno05030 Cocaine addiction rno05031 Amphetamine addiction rno05032 Morphine addiction rno05033 Nicotine addiction rno05034 Alcoholism rno05100 Bacterial invasion of epithelial cells rno05132 Salmonella infection rno05133 Pertussis rno05134 Legionellosis rno05140 Leishmaniasis rno05142 Chagas disease (American trypanosomiasis) rno05143 African trypanosomiasis rno05144 Malaria rno05145 Toxoplasmosis rno05146 Amoebiasis rno05150 Staphylococcus aureus infection rno05152 Tuberculosis rno05160 Hepatitis C rno05161 Hepatitis B rno05162 Measles rno05163 Human cytomegalovirus infection rno05164 Influenza A rno05165 Human papillomavirus infection rno05166 Human T-cell leukemia virus 1 infection rno05167 Kaposi sarcoma-associated herpesvirus infection rno05168 Herpes simplex infection rno05169 Epstein-Barr virus infection rno05170 Human immunodeficiency virus 1 infection rno05200 Pathways in cancer rno05202 Transcriptional misregulation in cancer rno05203 Viral carcinogenesis rno05204 Chemical carcinogenesis rno05205 Proteoglycans in cancer rno05206 MicroRNAs in cancer rno05210 Colorectal cancer rno05211 Renal cell carcinoma rno05212 Pancreatic cancer rno05213 Endometrial cancer rno05214 Glioma rno05215 Prostate cancer rno05216 Thyroid cancer rno05217 Basal cell carcinoma rno05218 Melanoma rno05219 Bladder cancer rno05220 Chronic myeloid leukemia rno05221 Acute myeloid leukemia rno05222 Small cell lung cancer rno05223 Non-small cell lung cancer rno05224 Breast cancer rno05225 Hepatocellular carcinoma rno05226 Gastric cancer rno05230 Central carbon metabolism in cancer rno05231 Choline metabolism in cancer rno05310 Asthma rno05320 Autoimmune thyroid disease rno05321 Inflammatory bowel disease (IBD) rno05322 Systemic lupus erythematosus rno05323 Rheumatoid arthritis rno05330 Allograft rejection rno05332 Graft-versus-host disease rno05340 Primary immunodeficiency rno05410 Hypertrophic cardiomyopathy (HCM) rno05412 Arrhythmogenic right ventricular cardiomyopathy (ARVC) rno05414 Dilated cardiomyopathy (DCM) rno05416 Viral myocarditis rno05418 Fluid shear stress and atherosclerosis