comparison add_protein_features.R @ 12:1a4cfa7a3a27 draft

planemo upload commit 77279e994f5751c6cd9aa165aa0604db3d241271-dirty
author proteore
date Mon, 11 Mar 2019 09:16:00 -0400
parents 8df559ad14a7
children 0116d444d21f
comparison
equal deleted inserted replaced
11:8df559ad14a7 12:1a4cfa7a3a27
1 # Read file and return file content as data.frame 1 # Read file and return file content as data.frame
2 read_file <- function(path,header){ 2 read_file <- function(path,header){
3 file <- try(read.table(path,header=header, sep="\t",stringsAsFactors = FALSE, quote="", check.names = F),silent=TRUE) 3 file <- try(read.csv(path,header=header, sep="\t",stringsAsFactors = FALSE, quote="", check.names = F),silent=TRUE)
4 if (inherits(file,"try-error")){ 4 if (inherits(file,"try-error")){
5 stop("File not found !") 5 stop("File not found !")
6 }else{ 6 }else{
7 file <- file[!apply(is.na(file) | file == "", 1, all), , drop=FALSE] 7 file <- file[!apply(is.na(file) | file == "", 1, all), , drop=FALSE]
8 return(file) 8 return(file)