Mercurial > repos > proteore > proteore_prot_features
diff protein_features.R @ 5:867d47ff782c draft
planemo upload commit 08f1831e097df5d74bf60ff5955e7e9c8e524cc8-dirty
author | proteore |
---|---|
date | Wed, 14 Mar 2018 12:04:32 -0400 |
parents | bfc679370c64 |
children | fc0118aa432a |
line wrap: on
line diff
--- a/protein_features.R Thu Mar 08 10:47:00 2018 -0500 +++ b/protein_features.R Wed Mar 14 12:04:32 2018 -0400 @@ -70,8 +70,12 @@ input = c(input, strsplit(row, ";")[[1]][1]) } } + + # Read reference file nextprot_file = args$nextprot - nextprot = human_id_map = read.table(nextprot_file, header = TRUE, sep = "\t", stringsAsFactors = FALSE, fill = TRUE, na.strings = "") + nextprot = read.table(nextprot_file, header = TRUE, sep = "\t", stringsAsFactors = FALSE, fill = TRUE, na.strings = "", quote = "") + + # Parse arguments typeid = args$type P1_args = strsplit(args$argsP1, ",")[[1]] P2_args = strsplit(args$argsP2, ",")[[1]] @@ -130,4 +134,4 @@ } } -protein_features() \ No newline at end of file +protein_features()