Mercurial > repos > proteore > proteore_prot_features
changeset 13:0116d444d21f draft
planemo upload commit a957a9b76923f071837aa5d86c1ee2271ebd34fd-dirty
| author | proteore |
|---|---|
| date | Mon, 11 Mar 2019 12:38:55 -0400 |
| parents | 1a4cfa7a3a27 |
| children | fc669cb6ae64 |
| files | add_protein_features.R add_protein_features.xml |
| diffstat | 2 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/add_protein_features.R Mon Mar 11 09:16:00 2019 -0400 +++ b/add_protein_features.R Mon Mar 11 12:38:55 2019 -0400 @@ -194,7 +194,7 @@ res = res[!duplicated(res$NextprotID),] output_content = merge(file, res,by.x=ncol,by.y="NextprotID",incomparables = NA,all.x=T) output_content = order_columns(output_content,ncol,id_type,file) - output_content = output_content[,-which(colnames(output_content)=="NextprotID")] #remove nextprotID column + if (id_type=="Uniprot_AC"){output_content = output_content[,-which(colnames(output_content)=="NextprotID")]} #remove nextprotID column output_content <- as.data.frame(apply(output_content, c(1,2), function(x) gsub("^$|^ $", NA, x))) #convert "" et " " to NA write.table(output_content, output, row.names = FALSE, sep = "\t", quote = FALSE) }
--- a/add_protein_features.xml Mon Mar 11 09:16:00 2019 -0400 +++ b/add_protein_features.xml Mon Mar 11 12:38:55 2019 -0400 @@ -1,4 +1,4 @@ -<tool id="prot_features" name="Add protein features" version="2019.03.11"> +<tool id="prot_features" name="Add protein features" version="2019.03.12"> <description>[neXtProt] </description> <requirements>