Mercurial > repos > proteore > proteore_prot_features_mouse

annotate README.rst @ 1:f10816a9dd0b draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit dbc027f59706f5b7d3f9f9319f2652baa50e2df5-dirty
author proteore
date Mon, 04 Mar 2019 05:12:46 -0500
parents 1e856941a888
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
1e856941a888 planemo upload commit 8de59a5dbf9206fa3d9f7a1c07e79ccb792b3e3f-dirty
proteore
parents:
diff changeset
1 Wrapper for Protein Features tool
1e856941a888 planemo upload commit 8de59a5dbf9206fa3d9f7a1c07e79ccb792b3e3f-dirty
proteore
parents:
diff changeset
2 =================================
1e856941a888 planemo upload commit 8de59a5dbf9206fa3d9f7a1c07e79ccb792b3e3f-dirty
proteore
parents:
diff changeset
3
1e856941a888 planemo upload commit 8de59a5dbf9206fa3d9f7a1c07e79ccb792b3e3f-dirty
proteore
parents:
diff changeset
4 **Authors**
1e856941a888 planemo upload commit 8de59a5dbf9206fa3d9f7a1c07e79ccb792b3e3f-dirty
proteore
parents:
diff changeset
5
1e856941a888 planemo upload commit 8de59a5dbf9206fa3d9f7a1c07e79ccb792b3e3f-dirty
proteore
parents:
diff changeset
6 David Christiany, Lisa Peru, T.P. Lien Nguyen, Florence Combes, Yves Vandenbrouck CEA, INSERM, CNRS, Grenoble-Alpes University, BIG Institute, FR
1e856941a888 planemo upload commit 8de59a5dbf9206fa3d9f7a1c07e79ccb792b3e3f-dirty
proteore
parents:
diff changeset
7
1e856941a888 planemo upload commit 8de59a5dbf9206fa3d9f7a1c07e79ccb792b3e3f-dirty
proteore
parents:
diff changeset
8 Sandra Dérozier, Olivier Rué, Christophe Caron, Valentin Loux INRA, Paris-Saclay University, MAIAGE Unit, Migale Bioinformatics platform
1e856941a888 planemo upload commit 8de59a5dbf9206fa3d9f7a1c07e79ccb792b3e3f-dirty
proteore
parents:
diff changeset
9
1e856941a888 planemo upload commit 8de59a5dbf9206fa3d9f7a1c07e79ccb792b3e3f-dirty
proteore
parents:
diff changeset
10 This work has been partially funded through the French National Agency for Research (ANR) IFB project.
1e856941a888 planemo upload commit 8de59a5dbf9206fa3d9f7a1c07e79ccb792b3e3f-dirty
proteore
parents:
diff changeset
11
1e856941a888 planemo upload commit 8de59a5dbf9206fa3d9f7a1c07e79ccb792b3e3f-dirty
proteore
parents:
diff changeset
12 Contact support@proteore.org for any questions or concerns about the Galaxy implementation of this tool.
1e856941a888 planemo upload commit 8de59a5dbf9206fa3d9f7a1c07e79ccb792b3e3f-dirty
proteore
parents:
diff changeset
13
1e856941a888 planemo upload commit 8de59a5dbf9206fa3d9f7a1c07e79ccb792b3e3f-dirty
proteore
parents:
diff changeset
14 ---------------------------------
1e856941a888 planemo upload commit 8de59a5dbf9206fa3d9f7a1c07e79ccb792b3e3f-dirty
proteore
parents:
diff changeset
15
1e856941a888 planemo upload commit 8de59a5dbf9206fa3d9f7a1c07e79ccb792b3e3f-dirty
proteore
parents:
diff changeset
16 This tool add annotation (protein features) from UniProt database (knowledge base on mouse proteins) to your protein IDs list.
1e856941a888 planemo upload commit 8de59a5dbf9206fa3d9f7a1c07e79ccb792b3e3f-dirty
proteore
parents:
diff changeset
17
1e856941a888 planemo upload commit 8de59a5dbf9206fa3d9f7a1c07e79ccb792b3e3f-dirty
proteore
parents:
diff changeset
18 **Input**
1e856941a888 planemo upload commit 8de59a5dbf9206fa3d9f7a1c07e79ccb792b3e3f-dirty
proteore
parents:
diff changeset
19
1e856941a888 planemo upload commit 8de59a5dbf9206fa3d9f7a1c07e79ccb792b3e3f-dirty
proteore
parents:
diff changeset
20 Input can be a file containing multiple fields but with **at least one column of Uniprot accession number**. If your input file contains other type of IDs, please use the ID_Converter tool.
1e856941a888 planemo upload commit 8de59a5dbf9206fa3d9f7a1c07e79ccb792b3e3f-dirty
proteore
parents:
diff changeset
21
1e856941a888 planemo upload commit 8de59a5dbf9206fa3d9f7a1c07e79ccb792b3e3f-dirty
proteore
parents:
diff changeset
22 **Databases**
1e856941a888 planemo upload commit 8de59a5dbf9206fa3d9f7a1c07e79ccb792b3e3f-dirty
proteore
parents:
diff changeset
23
1e856941a888 planemo upload commit 8de59a5dbf9206fa3d9f7a1c07e79ccb792b3e3f-dirty
proteore
parents:
diff changeset
24 Annotations have been retrieved from the UniProt API.
1e856941a888 planemo upload commit 8de59a5dbf9206fa3d9f7a1c07e79ccb792b3e3f-dirty
proteore
parents:
diff changeset
25
1e856941a888 planemo upload commit 8de59a5dbf9206fa3d9f7a1c07e79ccb792b3e3f-dirty
proteore
parents:
diff changeset
26 **Outputs**
1e856941a888 planemo upload commit 8de59a5dbf9206fa3d9f7a1c07e79ccb792b3e3f-dirty
proteore
parents:
diff changeset
27
1e856941a888 planemo upload commit 8de59a5dbf9206fa3d9f7a1c07e79ccb792b3e3f-dirty
proteore
parents:
diff changeset
28 The output is a tabular file. The initial columns are kept and columns are be added according to which annotation you have selected.