# HG changeset patch
# User proteore
# Date 1561712758 14400
# Node ID 1dea4e5f638f15511c790dafbb3195acd735f285
# Parent  f10816a9dd0b38e01792ae0abf53ff4445f20793
planemo upload commit 4ba1ebe7b3f5e3fabf78b5fed7ed0b92e2cbf9e5-dirty

diff -r f10816a9dd0b -r 1dea4e5f638f add_protein_features_mouse.R
--- a/add_protein_features_mouse.R	Mon Mar 04 05:12:46 2019 -0500
+++ b/add_protein_features_mouse.R	Fri Jun 28 05:05:58 2019 -0400
@@ -11,6 +11,7 @@
 }
 
 get_list_from_cp <-function(list){
+  list = gsub(";","\t",list)
   list = strsplit(list, "[ \t\n]+")[[1]]
   list = gsub("NA","",list)
   list = list[list != ""]    #remove empty entry
diff -r f10816a9dd0b -r 1dea4e5f638f add_protein_features_mouse.xml
--- a/add_protein_features_mouse.xml	Mon Mar 04 05:12:46 2019 -0500
+++ b/add_protein_features_mouse.xml	Fri Jun 28 05:05:58 2019 -0400
@@ -1,4 +1,4 @@
-<tool id="prot_features_mouse" name="Add protein features (Mouse)" version="2019.02.21">
+<tool id="prot_features_mouse" name="Add protein features (Mouse)" version="2019.06.27">
 <description>[UniProt]
 </description>
 <requirements>
@@ -105,21 +105,25 @@
 
 **Description**
 
-This tool retrieves annotation (protein features) from the UniProt database (Mouse proteins) to enrich your protein IDs list.
+This tool retrieves annotation (protein features) from the UniProt database (Mouse reference proteome) to enrich your protein IDs list.
 
 -----
 
 **Input**
 
-A list of Uniprot Accession Number (e.g. P05090) entered in a copy/paste mode or a file containing one or multiple columns with **at least one column of Uniprot accession number**. If your input file contains other type of IDs, please use the ID_Converter tool.  
+A list of UniProt Accession Number (e.g. P05090) entered in a copy/paste mode or a file containing one or multiple columns with **at least one column of Uniprot accession number**. If your input file contains other type of IDs, please use the ID_Converter tool.  
+
+.. class:: warningmark
+	
+In copy/paste mode, the number of UniProt AccNumber considered in input, is limited to 5000.
 
 -----
 
 **Parameters**
 
-"Select features": three categories of annotation can be retrieved: physico-chemical features, localisation (chromosome, subcellular) and disease information (set to "Yes" by default). Select each feature according to your interest by clicking the corresponding checkbox. 
+"Select features": Select each feature according to your interest by clicking the corresponding checkbox. 
 
-You can get more information about annotations `here <https://www.uniprot.org/help/uniprotkb_column_names>`_.
+for more information about these features click `here <https://www.uniprot.org/help/uniprotkb_column_names>`_.
 
 
 -----
@@ -133,7 +137,7 @@
 
 **Data source (release date)**
 
-Annotations have been retrieved from UniProt.org (02/2019).
+Annotations have been retrieved from UniProt.org (release 02/2019).
 
 -----
 
@@ -141,13 +145,13 @@
 
 **Authors**
 
-David Christiany, Lisa Peru, T.P. Lien Nguyen, Florence Combes, Yves Vandenbrouck CEA, INSERM, CNRS, Grenoble-Alpes University, BIG Institute, FR
+David Christiany, Lisa Perus, T.P. Lien Nguyen, Florence Combes, Yves Vandenbrouck CEA, INSERM, CNRS, Grenoble-Alpes University, BIG Institute, FR
 
 Sandra Dérozier, Olivier Rué, Christophe Caron, Valentin Loux INRA, Paris-Saclay University, MAIAGE Unit, Migale Bioinformatics platform, FR
 
 This work has been partially funded through the French National Agency for Research (ANR) IFB project.
 
-Contact support@proteore.org for any questions or concerns about the Galaxy implementation of this tool.
+Help: contact@proteore.org for any questions or concerns about this tool.
  
     ]]></help>
     <citations>