Mercurial > repos > proteore > proteore_reactome
diff reactome_analysis.xml @ 8:a58dc5d4b8cd draft
planemo upload commit 4ba1ebe7b3f5e3fabf78b5fed7ed0b92e2cbf9e5-dirty
| author | proteore |
|---|---|
| date | Fri, 28 Jun 2019 05:17:11 -0400 |
| parents | 6c95f1b88627 |
| children | badc91b93945 |
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--- a/reactome_analysis.xml Tue Mar 05 09:40:41 2019 -0500 +++ b/reactome_analysis.xml Fri Jun 28 05:17:11 2019 -0400 @@ -1,4 +1,4 @@ -<tool id="reactome_analysis" name="Query pathway database" version="2019.03.05"> +<tool id="reactome_analysis" name="Query pathway database" version="2019.06.27"> <description>[Reactome]</description> <requirements> </requirements> @@ -20,7 +20,7 @@ ]]></command> <inputs> <conditional name="opt"> - <param name="input" type="select" label="Input IDs (UniProt Accession number, Entrez Gene ID or Gene Name" multiple="False" > + <param name="input" type="select" label="Input IDs (UniProt Accession number, Entrez Gene ID, Gene Name)" multiple="False" > <option value="text">Copy/paste your list of IDs </option> <option value="file" selected="true">Input file containing your IDs</option> </param> @@ -44,7 +44,7 @@ </param> </when> </conditional> - <param name="species" type="select" label="Species"> + <param name="species" type="select" label="Species (human, mouse, rat)"> <option value="48887">Human (Homo sapiens)</option> <option value="48892">Mouse (Mouse musculus)</option> <option value="48895">Rat (Rattus norvegicus)</option> @@ -82,6 +82,10 @@ ID types allowed are: UniProt accNumber (e.g. O75391), Entrez gene ID (e.g. 8086) and gene name (e.g. TP53, NUP58...). If you have other type of ID, please use the ID_Converter tool of ProteoRE. +.. class:: warningmark + +In copy/paste mode, the number of IDs considered in input is limited to 5000. + ----- **Parameters** @@ -108,13 +112,13 @@ **Galaxy integration** -T.P. Lien Nguyen, Florence Combes, Yves Vandenbrouck - CEA, INSERM, CNRS, Grenoble-Alpes University, BIG Institute, FR +Lien Nguyen, Florence Combes, Yves Vandenbrouck - CEA, INSERM, CNRS, Grenoble-Alpes University, BIG Institute, FR Sandra Dérozier, Olivier Rué, Christophe Caron, Valentin Loux - INRA, Paris-Saclay University, MAIAGE Unit, Migale Bioinformatics platform, FR This work has been partially funded through the French National Agency for Research (ANR) IFB project. -Contact support@proteore.org for any questions or concerns about the Galaxy implementation of this tool. +Help: contact@proteore.org for any questions or concerns about this tool. ]]></help> <citations> </citations>