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diff test-data/result.tsv @ 16:7f1ce70f0f09 draft default tip

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"planemo upload commit 29a04769c0546be759c38bbcc157c8bc09ec1115-dirty"
author proteore
date Mon, 17 May 2021 14:40:03 +0000
parents 8eaa43ba1bfc
children
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--- a/test-data/result.tsv	Fri Jan 24 10:45:15 2020 -0500
+++ b/test-data/result.tsv	Mon May 17 14:40:03 2021 +0000
@@ -1,63 +1,58 @@
 GO.ID	Term	Annotated	Significant	Expected	pvalues	qvalues
-GO:0070268	cornification	128	21	1.01	4.8e-22	3.792e-18
-GO:0001895	retina homeostasis	70	15	0.55	6.8e-18	3.58133333333333e-14
-GO:0010951	negative regulation of endopeptidase act...	279	22	2.2	2.2e-11	8.69e-08
-GO:0061621	canonical glycolysis	27	7	0.21	1.3e-09	4.108e-06
-GO:0046718	viral entry into host cell	155	12	1.22	3.6e-09	9.48e-06
-GO:0042026	protein refolding	36	7	0.28	1.1e-08	2.054e-05
-GO:0002576	platelet degranulation	138	11	1.09	1.2e-08	2.054e-05
-GO:0070370	cellular heat acclimation	11	5	0.09	1.3e-08	2.054e-05
-GO:0070434	positive regulation of nucleotide-bindin...	11	5	0.09	1.3e-08	2.054e-05
-GO:0090063	positive regulation of microtubule nucle...	12	5	0.09	2.1e-08	3.01636363636364e-05
-GO:1900034	regulation of cellular response to heat	93	9	0.73	5.0e-08	6.58333333333333e-05
-GO:1903265	positive regulation of tumor necrosis fa...	16	5	0.13	1.2e-07	0.000145846153846154
-GO:0050821	protein stabilization	181	11	1.43	2.0e-07	0.000225714285714286
-GO:0090084	negative regulation of inclusion body as...	19	5	0.15	3.0e-07	0.000316
-GO:0061436	establishment of skin barrier	20	5	0.16	4.0e-07	0.000395
-GO:0018149	peptide cross-linking	60	7	0.47	4.4e-07	0.000408941176470588
-GO:0042542	response to hydrogen peroxide	136	11	1.07	1.0e-06	0.000877777777777778
-GO:1901673	regulation of mitotic spindle assembly	27	5	0.21	2.0e-06	0.00166315789473684
-GO:0098869	cellular oxidant detoxification	114	8	0.9	3.3e-06	0.002607
-GO:2000117	negative regulation of cysteine-type end...	116	8	0.91	3.8e-06	0.00285904761904762
-GO:0006094	gluconeogenesis	85	7	0.67	4.8e-06	0.00344727272727273
-GO:0034599	cellular response to oxidative stress	309	15	2.43	6.8e-06	0.00467130434782609
-GO:0001580	detection of chemical stimulus involved ...	61	6	0.48	8.4e-06	0.00553
-GO:0051092	positive regulation of NF-kappaB transcr...	173	9	1.36	9.5e-06	0.006004
-GO:0045104	intermediate filament cytoskeleton organ...	45	5	0.35	2.7e-05	0.0164076923076923
-GO:0042744	hydrogen peroxide catabolic process	23	4	0.18	2.9e-05	0.0169703703703704
-GO:0007568	aging	312	11	2.46	3.8e-05	0.0214428571428571
-GO:2001240	negative regulation of extrinsic apoptot...	49	5	0.39	4.1e-05	0.0223379310344828
-GO:0031397	negative regulation of protein ubiquitin...	172	10	1.35	4.7e-05	0.0247533333333333
-GO:0002934	desmosome organization	10	3	0.08	5.5e-05	0.0280322580645161
-GO:1902396	protein localization to bicellular tight...	2	2	0.02	6.2e-05	0.0296848484848485
-GO:1903923	positive regulation of protein processin...	2	2	0.02	6.2e-05	0.0296848484848485
-GO:0006953	acute-phase response	57	5	0.45	8.5e-05	0.0388228571428571
-GO:1900740	positive regulation of protein insertion...	30	4	0.24	8.6e-05	0.0388228571428571
-GO:0045471	response to ethanol	138	7	1.09	0.00011	0.0482777777777778
-GO:0070527	platelet aggregation	62	5	0.49	0.00013	0.0555135135135135
-GO:0032757	positive regulation of interleukin-8 pro...	63	5	0.5	0.00014	0.0567179487179487
-GO:0046686	response to cadmium ion	63	5	0.5	0.00014	0.0567179487179487
-GO:0003064	regulation of heart rate by hormone	3	2	0.02	0.00018	0.0677142857142857
-GO:0043163	cell envelope organization	3	2	0.02	0.00018	0.0677142857142857
-GO:0061740	protein targeting to lysosome involved i...	3	2	0.02	0.00018	0.0677142857142857
-GO:0042493	response to drug	438	12	3.45	0.00019	0.0698139534883721
-GO:0086091	regulation of heart rate by cardiac cond...	38	4	0.3	0.00022	0.079
-GO:0038061	NIK/NF-kappaB signaling	166	7	1.31	0.00035	0.121791666666667
-GO:0051016	barbed-end actin filament capping	18	3	0.14	0.00036	0.121791666666667
-GO:1902309	negative regulation of peptidyl-serine d...	4	2	0.03	0.00037	0.121791666666667
-GO:1905913	negative regulation of calcium ion expor...	4	2	0.03	0.00037	0.121791666666667
-GO:0010389	regulation of G2/M transition of mitotic...	226	8	1.78	0.00043	0.13865306122449
-GO:0043488	regulation of mRNA stability	174	7	1.37	0.00046	0.14536
-GO:0046716	muscle cell cellular homeostasis	20	3	0.16	0.00049	0.151803921568627
-GO:0006402	mRNA catabolic process	414	15	3.26	0.00050	0.151923076923077
-GO:0046827	positive regulation of protein export fr...	21	3	0.17	0.00057	0.169924528301887
-GO:0048549	positive regulation of pinocytosis	5	2	0.04	0.00061	0.172107142857143
-GO:0001907	killing by symbiont of host cells	5	2	0.04	0.00061	0.172107142857143
-GO:0033591	response to L-ascorbic acid	5	2	0.04	0.00061	0.172107142857143
-GO:0030216	keratinocyte differentiation	354	30	2.79	0.00065	0.180175438596491
-GO:0006754	ATP biosynthetic process	51	4	0.4	0.00069	0.187965517241379
-GO:0070301	cellular response to hydrogen peroxide	92	5	0.72	0.00080	0.214237288135593
-GO:0061844	antimicrobial humoral immune response me...	54	4	0.43	0.00086	0.226466666666667
-GO:0086073	bundle of His cell-Purkinje myocyte adhe...	6	2	0.05	0.00091	0.228222222222222
-GO:0032417	positive regulation of sodium:proton ant...	6	2	0.05	0.00091	0.228222222222222
-GO:0071638	negative regulation of monocyte chemotac...	6	2	0.05	0.00091	0.228222222222222
+GO:0070268	cornification	128	21	0.96	1.9e-22	1.51316e-18
+GO:0001895	retina homeostasis	73	15	0.55	6.9e-18	3.66344e-14
+GO:0010951	negative regulation of endopeptidase act...	230	16	1.73	4.4e-10	1.75208e-06
+GO:0061621	canonical glycolysis	30	7	0.23	2.1e-09	6.59874285714286e-06
+GO:0042026	protein refolding	31	7	0.23	2.7e-09	6.59874285714286e-06
+GO:0046718	viral entry into host cell	159	12	1.2	2.9e-09	6.59874285714286e-06
+GO:0002576	platelet degranulation	139	11	1.05	8.3e-09	1.5928e-05
+GO:0070370	cellular heat acclimation	11	5	0.08	1.0e-08	1.5928e-05
+GO:0070434	positive regulation of nucleotide-bindin...	11	5	0.08	1.0e-08	1.5928e-05
+GO:0090063	positive regulation of microtubule nucle...	12	5	0.09	1.7e-08	2.4616e-05
+GO:1900034	regulation of cellular response to heat	97	9	0.73	5.0e-08	6.63666666666667e-05
+GO:1903265	positive regulation of tumor necrosis fa...	18	5	0.14	1.8e-07	0.000220541538461538
+GO:0018149	peptide cross-linking	36	6	0.27	2.7e-07	0.000307182857142857
+GO:0090084	negative regulation of inclusion body as...	20	5	0.15	3.2e-07	0.000339797333333333
+GO:0050821	protein stabilization	200	11	1.51	3.5e-07	0.000348425
+GO:0061436	establishment of skin barrier	23	5	0.17	6.8e-07	0.00063712
+GO:0001580	detection of chemical stimulus involved ...	49	6	0.37	1.8e-06	0.0015928
+GO:1901673	regulation of mitotic spindle assembly	28	5	0.21	1.9e-06	0.0015928
+GO:0006094	gluconeogenesis	93	7	0.7	6.6e-06	0.00525624
+GO:0034599	cellular response to oxidative stress	330	14	2.49	7.5e-06	0.00568857142857143
+GO:0045648	positive regulation of erythrocyte diffe...	40	5	0.3	1.2e-05	0.008688
+GO:0051092	positive regulation of NF-kappaB transcr...	190	9	1.43	1.4e-05	0.00969530434782609
+GO:2001240	negative regulation of extrinsic apoptot...	46	5	0.35	2.4e-05	0.01529088
+GO:0042744	hydrogen peroxide catabolic process	23	4	0.17	2.4e-05	0.01529088
+GO:0098869	cellular oxidant detoxification	120	7	0.9	3.5e-05	0.0214415384615385
+GO:1900740	positive regulation of protein insertion...	26	4	0.2	4.1e-05	0.024186962962963
+GO:1903923	positive regulation of protein processin...	2	2	0.02	5.6e-05	0.0313067586206897
+GO:0031397	negative regulation of protein ubiquitin...	89	6	0.67	5.7e-05	0.0313067586206897
+GO:0045471	response to ethanol	131	7	0.99	6.1e-05	0.0323869333333333
+GO:0032757	positive regulation of interleukin-8 pro...	64	5	0.48	0.00012	0.05792
+GO:0070527	platelet aggregation	64	5	0.48	0.00012	0.05792
+GO:0046686	response to cadmium ion	64	5	0.48	0.00012	0.05792
+GO:0061844	antimicrobial humoral immune response me...	66	5	0.5	0.00014	0.0655858823529412
+GO:0003064	regulation of heart rate by hormone	3	2	0.02	0.00017	0.0731827027027027
+GO:0061740	protein targeting to lysosome involved i...	3	2	0.02	0.00017	0.0731827027027027
+GO:0007568	aging	387	11	2.91	0.00017	0.0731827027027027
+GO:0086091	regulation of heart rate by cardiac cond...	39	4	0.29	0.00021	0.0880231578947368
+GO:0007157	heterophilic cell-cell adhesion via plas...	40	4	0.3	0.00023	0.093934358974359
+GO:0045087	innate immune response	1367	30	10.29	0.00030	0.116805333333333
+GO:0045104	intermediate filament cytoskeleton organ...	44	4	0.33	0.00033	0.116805333333333
+GO:0043163	cell envelope organization	4	2	0.03	0.00033	0.116805333333333
+GO:1902396	protein localization to bicellular tight...	4	2	0.03	0.00033	0.116805333333333
+GO:1902309	negative regulation of peptidyl-serine d...	4	2	0.03	0.00033	0.116805333333333
+GO:1905913	negative regulation of calcium ion expor...	4	2	0.03	0.00033	0.116805333333333
+GO:0042542	response to hydrogen peroxide	148	8	1.11	0.00036	0.124653913043478
+GO:0043488	regulation of mRNA stability	184	7	1.39	0.00050	0.165916666666667
+GO:0035357	peroxisome proliferator activated recept...	21	3	0.16	0.00050	0.165916666666667
+GO:0033591	response to L-ascorbic acid	5	2	0.04	0.00055	0.178783673469388
+GO:0046827	positive regulation of protein export fr...	22	3	0.17	0.00058	0.1847648
+GO:0072594	establishment of protein localization to...	498	17	3.75	0.00062	0.193634509803922
+GO:0046716	muscle cell cellular homeostasis	23	3	0.17	0.00066	0.202163076923077
+GO:0006605	protein targeting	402	12	3.03	0.00082	0.230681379310345
+GO:0086073	bundle of His cell-Purkinje myocyte adhe...	6	2	0.05	0.00083	0.230681379310345
+GO:0032417	positive regulation of sodium:proton ant...	6	2	0.05	0.00083	0.230681379310345
+GO:0071638	negative regulation of monocyte chemotac...	6	2	0.05	0.00083	0.230681379310345
+GO:0030050	vesicle transport along actin filament	6	2	0.05	0.00083	0.230681379310345
+GO:0006953	acute-phase response	56	4	0.42	0.00084	0.230681379310345