Mercurial > repos > public-health-bioinformatics > amino2consensus

diff amino2consensus.xml @ 0:1e0389317446 draft

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"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/micall-lite commit 9c3ab5825c19a7c400a46f727975edb480a91c09"
author public-health-bioinformatics
date Mon, 06 Jan 2020 19:11:48 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/amino2consensus.xml	Mon Jan 06 19:11:48 2020 -0500
@@ -0,0 +1,29 @@
+<tool id="amino2consensus" name="MiCall Amino to Consensus" version="@TOOL_VERSION@+galaxy0">
+    <description></description>
+    <macros>
+        <import>macros.xml</import>
+    </macros>
+    <requirements>
+    </requirements>
+    <version_command>echo "@TOOL_VERSION@"</version_command>
+    <command detect_errors="exit_code">
+        <![CDATA[
+          '${__tool_directory__}/amino2consensus.py'
+          --threshold ${threshold}
+          '${amino}'
+          > '${consensus}'
+        ]]>
+    </command>
+    <inputs>
+        <param format="csv" name="amino" type="data" label="MiCall amino.csv output" help="MiCall amino.csv output" />
+        <param name="threshold" type="float" min="0" value="0.15" max="1" label="Threshold" help="Threshold" />
+    </inputs>
+    <outputs>
+        <data name="consensus" label="consensus" format="fasta"/>
+    </outputs>
+    <tests>
+    </tests>
+    <help><![CDATA[
+    ]]></help>
+    <expand macro="citations" />
+</tool>