Mercurial > repos > public-health-bioinformatics > amino2consensus

view amino2consensus.xml @ 2:ee780352368b draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/micall-lite commit 2436110003f0cf659a4f7e7d5b7312e8b84ad9db"
author public-health-bioinformatics
date Thu, 27 Feb 2020 19:15:58 -0500
parents 1e0389317446
children
line wrap: on
line source

<tool id="amino2consensus" name="MiCall Amino to Consensus" version="@TOOL_VERSION@+galaxy0">
    <description></description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <requirements>
    </requirements>
    <version_command>echo "@TOOL_VERSION@"</version_command>
    <command detect_errors="exit_code">
        <![CDATA[
          '${__tool_directory__}/amino2consensus.py'
          --threshold ${threshold}
          '${amino}'
          > '${consensus}'
        ]]>
    </command>
    <inputs>
        <param format="csv" name="amino" type="data" label="MiCall amino.csv output" help="MiCall amino.csv output" />
        <param name="threshold" type="float" min="0" value="0.15" max="1" label="Threshold" help="Threshold" />
    </inputs>
    <outputs>
        <data name="consensus" label="consensus" format="fasta"/>
    </outputs>
    <tests>
    </tests>
    <help><![CDATA[
    ]]></help>
    <expand macro="citations" />
</tool>