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"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/micall-lite commit e58e1a02d64c2771fadf006bdf8f3661d069b6f3"
author public-health-bioinformatics
date Fri, 28 Feb 2020 13:03:20 -0500
parents 1e0389317446
children
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<tool id="amino2consensus" name="MiCall Amino to Consensus" version="@TOOL_VERSION@+galaxy0">
    <description></description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <requirements>
    </requirements>
    <version_command>echo "@TOOL_VERSION@"</version_command>
    <command detect_errors="exit_code">
        <![CDATA[
          '${__tool_directory__}/amino2consensus.py'
          --threshold ${threshold}
          '${amino}'
          > '${consensus}'
        ]]>
    </command>
    <inputs>
        <param format="csv" name="amino" type="data" label="MiCall amino.csv output" help="MiCall amino.csv output" />
        <param name="threshold" type="float" min="0" value="0.15" max="1" label="Threshold" help="Threshold" />
    </inputs>
    <outputs>
        <data name="consensus" label="consensus" format="fasta"/>
    </outputs>
    <tests>
    </tests>
    <help><![CDATA[
    ]]></help>
    <expand macro="citations" />
</tool>