Mercurial > repos > public-health-bioinformatics > linelisting
comparison test-data/fluA_H3_clade_assigned_antigenic_sites_extracted.fasta @ 0:be856549e863 draft default tip
planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit b96b6e06f6eaa6ae8ef4c24630dbb72a4aed7dbe
author | public-health-bioinformatics |
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date | Thu, 04 Jul 2019 19:37:41 -0400 |
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-1:000000000000 | 0:be856549e863 |
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1 >A-ON-314-2017_3C.3a | |
2 QNSSIEIDSQLENIQGQNKKLFVNKYNVPRTNNSNAGVTQNTSSIGSKSSRNTHLNSKAL | |
3 NTMNNEQFDKLIVGTDKDISLAQSRTKRSAVIPNIGSIPSRIKGILNSTIRSSPGKKSEF | |
4 VRIACRYVKQS | |
5 | |
6 >A-AB-399-2017_3C.2a_+_N31S_+_D53N_+_R142G_+_S144R_+_N171K_+_I192T_+_Q197H | |
7 QNSSIEINSQLENIQGQNKKLFVSKYNVPRTNNSNTGVTQNTSAIGSRSSRNTHLNYTAL | |
8 NTMNKEQFDKLIVGTDKDTFLAHSRTKRSAVIPNIGSIPSRIKGLLNSTIRSSPGKKSEF | |
9 VRIACRYVKHS | |
10 | |
11 >A-QC-303-2017_3C.2a_+_N31S_+_D53N_+_R142G_+_S144R_+_N171K_+_I192T_+_Q197H | |
12 QNSSIEINSQLENIQGQNKKLFVSKYNVPRTNNSNTGVTQNTSAIGSRSSRNTHLNYTAL | |
13 NTMNKEQFDKLIVGTDKDTFLAHSRTKRSAVIPNIGSIPSRIKGLLNSTIRSSPGKKSEF | |
14 VRIACRYVKHS | |
15 | |
16 >A-AB-319-2017_3C.2a_+_N31S_+_D53N_+_R142G_+_S144R_+_N171K_+_I192T_+_Q197H | |
17 QNSSIEINSQLENIQGQNKKLFVSKYNVPRTNNSNTGVTQNTSAIGSRSSRNTHLNYTAL | |
18 NTMNKEQFDKLIVGTDKDTFLAHSRTKRSAVIPNIGSIPSRIKGLLNSTIRSSPGKKSEF | |
19 VRIACRYVKHS | |
20 | |
21 >A-AB-308-2017_3C.2a1_+_N121K_+_T135K | |
22 QNSSIEIDSQLENIQDQNKKLFVSKHNVPRTKDSNTGVTQNKSAIRSSSSRNTHLNYTAL | |
23 NTMNKEQFDKLIIGTDKDIFLAQSRTKRSAVIPNIGSIPSRIKGILNSTIRSSPGKKSEF | |
24 VRIACRYVKHS | |
25 | |
26 >A-AB-341-2017_3C.2a1_+_N121K_+_T135K | |
27 QNSSIEIDSQLENIQDQNKKLFVSKHNVPRTKDSNTGVTQNKSAIRSSSSRNTHLNYTAL | |
28 NTMNKEQFDKLIIGTDKDIFLAQSRTKRSAVIPNIGSIPSRIKGILNSTIRSSPGKKSEF | |
29 VRIACRYVKHS | |
30 | |
31 >A-BC-024-2018_3C.2a1_+_N121K_+_T135K | |
32 QNSSIEIDSQLENIQDQNKKLFVSKHNVPRTKNSNTGVTQNKSAIRSSSSRNTHLNYTAL | |
33 NTMNKEQFDKLIIGTDKDIFLAQSRTKRSAVIPNIGSIPSRIKGILNSTIRSSPGKKSEF | |
34 VRIACRYVKHS | |
35 | |
36 >A-QC-309-2017_3C.2a1_+_N121K_+_K92R_+_H311Q | |
37 QNSSIEIDSQLGNIQDQNKKLFVSRYNVPRTKDSNTGVTQNKSAIGSSSSRNTHLNYTAL | |
38 NTMNKEQFDKLIVGTDKDIFLAQSRTKRSAVIPNIGSIPSRIKGILNSTIRSSPGKKSEF | |
39 VRIACRYVKQS | |
40 | |
41 >A-BC-324-2017_3C.2a1_+_N121K_+_K92R_+_H311Q | |
42 QNSSMEIDSQLGNIQGQNKKLFVSRYNVPRTKNSNTGVTQNKSAIGSSSSRNTHLNYTAL | |
43 NTMNKEQFDKLIVGTDKDIFLAQSRTKRSAVIPNIGSIPSRIKGILNSTIRSSPGKKSEF | |
44 VRIACRYVKQS | |
45 | |
46 >A-QC-315-2017_3C.2a1_+_N121K_+_K92R_+_H311Q | |
47 QNSSIEIDSQLGNIQGQNKKLFVSRYNVPRTKNSNAGVTQNKSAIGSSSSRNTHLNYTAL | |
48 NTMNKEQFDKLIVGTDKDIFLAQSRTKRSAVIPNIGSIPSRIKGILNSTIRSSPGKKSEF | |
49 VRIACRYVKQS | |
50 | |
51 >A-ON-016-2018_3C.2a_+_N121K_+_S144K | |
52 QNSSIEIDSQLENIQGQNKKLFVSKYNVPRTKNSNTGVTQNKSAIRSKSSKNTHLNYTAL | |
53 NTMNNEQFDKLIVGTDKDIFLAQSRTKRSAVIPNIGSIPSRIKGILNSTIQSSPGKKSEF | |
54 VRIACRYVKHS | |
55 | |
56 >A-BC-325-2017_3C.2a_+_N121K_+_S144K | |
57 QNSSIEIDSQLENIQGQNKKLFVSKYNVPRTKNSNTGVTQNKSAIRSKSSKNTHLNYTAL | |
58 NTMNNEQFDKLIVGTDKDIFLAQSRTKRSAVIPNIGSIPSRIKGILNSTIQSSPGKKSEF | |
59 VRIACRYVKHS | |
60 | |
61 >A-ON-003-2018_3C.2a_+_N121K_+_S144K | |
62 QNSSIEIDSQLENIQGQNKKLFVSKYNVPRTKNSNTGVTQNKSAIRSKSSKNTHLNYTAL | |
63 NTMNNEQFDKLIVGTDKDIFLAQSRTKRSAVIPNIGSIPSRIKGILNSTIQSSPGKKSEF | |
64 VRIACRYVKHS | |
65 | |
66 >A-ON-309-2017_No_Match | |
67 QNSSIEIDSQLENIQGQNKKLFVSKYNVPRTNNSNTGVKQNTSAIKSSSSRNTHLNYKAL | |
68 NTMNNEQFDKLIVGTDKDIFLAQSKTKISAVIPNIGSIPSRIKGILNSTIQSSPGKKSEF | |
69 VRIACRYVKHS | |
70 | |
71 >A-BC-330-2017_No_Match | |
72 QNSSIEIDSQLENIQGQNKKLFVSKYNVPRTNNSNTGVKQNTSAIKSRSSRNTHLNYTAL | |
73 NTMNNEQFDKLIVGTDKDIFLAQSRTKRSAVIPNIGSIPSRIKGILNSTIQSSPGKKSEF | |
74 VRIACRYVKHS | |
75 | |
76 >A-AB-415-2017_3C.2a_+_T131K_+_R142K_+_R261Q | |
77 QNSSIEIDSQLENIQGQNKKLFVSRYNVPRTNNSNTGVKQNTSAIKSSSSRNTHLNYTAL | |
78 NTMNNEQFDKLIVGTDKDIFLAQSRTKRSAVIPNIGFIPSRIKGILNSTIQSSPGKKSEF | |
79 VRIACRYVKHS | |
80 | |
81 >A-AB-400-2017_3C.2a_+_T131K_+_R142K_+_R261Q | |
82 QNSSIEIDSQLENIQGQNKKLFVSRYNVPRTNNSNTGVKQNTSAIKSSSSRNTHLNYTAL | |
83 NTMNNEQFDKLIVGTDKDIFLAQSRTKRSAVIPNIGSIPSRIKGILNSTIQSSPGKKSEF | |
84 VRIACRYVKHS | |
85 | |
86 >A-AB-416-2017_3C.2a_+_T131K_+_R142K_+_R261Q | |
87 QNSSIEIDSQLENIQGQNKKLFVSRYNVPRTNNSNTGVKQNTSAIKSSSSRNTHLNYTAL | |
88 NTMNNEQFDKLIVGTDKDIFLAQSRTKRSAVIPNIGSIPSRIKGILNSTIQSSPGKKSEF | |
89 VRIACRYVKHS | |
90 | |
91 >A-QC-316-2017_3C.2a_+_T131K_+_R142K_+_R261Q | |
92 QNSSIEIDSQLENIQGQNKKLFVSRYNVPRTNNSNTGVKQNTSAIKSSSSRNTHLNYTAL | |
93 NTMNNEQFDKLIVGTDKDIFLAQSRTKRSAVIPNIGSIPSRIKGILNSTIQSSPGKKSEF | |
94 VRIACRYVKHS |