# HG changeset patch
# User q2d2
# Date 1752615796 0
# Node ID 4e9939e79726cb97e17f21b995e26675904d1a73
# Parent  ab62eec0cd2b166e5d64f319f6bd76db38df789b
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__alignment commit 9436cc47c72b58a6a3d3a5c2ee075689c2926ef0

diff -r ab62eec0cd2b -r 4e9939e79726 qiime2__alignment__mafft.xml
--- a/qiime2__alignment__mafft.xml	Mon May 05 18:40:38 2025 +0000
+++ b/qiime2__alignment__mafft.xml	Tue Jul 15 21:43:16 2025 +0000
@@ -6,17 +6,17 @@
 -->
 <!--
 This tool was automatically generated by:
-    q2galaxy (version: 2025.4.0)
+    q2galaxy (version: 2025.7.0)
 for:
-    qiime2 (version: 2025.4.0)
+    qiime2 (version: 2025.7.0)
 -->
-<tool name="qiime2 alignment mafft" id="qiime2__alignment__mafft" version="2025.4.0+q2galaxy.2025.4.0" profile="22.05" license="BSD-3-Clause">
+<tool name="qiime2 alignment mafft" id="qiime2__alignment__mafft" version="2025.7.0+q2galaxy.2025.7.0" profile="22.05" license="BSD-3-Clause">
     <description>De novo multiple sequence alignment with MAFFT</description>
     <xrefs>
         <xref type="bio.tools">qiime2</xref>
     </xrefs>
     <requirements>
-        <container type="docker">quay.io/qiime2/amplicon:2025.4</container>
+        <container type="docker">quay.io/qiime2/amplicon:2025.7</container>
     </requirements>
     <version_command>q2galaxy version alignment</version_command>
     <command detect_errors="exit_code">q2galaxy run alignment mafft '$inputs'</command>
@@ -32,6 +32,7 @@
         </param>
         <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
             <param name="parttree" type="boolean" truevalue="__q2galaxy__::literal::True" falsevalue="__q2galaxy__::literal::False" label="parttree: Bool" help="[default: No]  This flag is required if the number of sequences being aligned are larger than 1000000. Disabled by default"/>
+            <param name="large" type="boolean" truevalue="__q2galaxy__::literal::True" falsevalue="__q2galaxy__::literal::False" label="large: Bool" help="[default: No]  This flag is required when aligning very large datasets that do not otherwise fit into memory. Temporary data is then stored in files, instead of RAM. The --use-cache flag specifies the storage location of the temporary files created. By default, $TMP/qiime2/ is used."/>
         </section>
     </inputs>
     <outputs>