# HG changeset patch
# User q2d2
# Date 1769616652 0
# Node ID 4facd8fa09a62aef033283998ae44063216b1ec5
# Parent  0dac6571621a785fee9dff43dfd87a48452ecc7a
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__alignment commit 36ec48f8c55799a0c963733df13da30f19b1bdf3

diff -r 0dac6571621a -r 4facd8fa09a6 qiime2__alignment__mask.xml
--- a/qiime2__alignment__mask.xml	Sat Nov 01 17:06:59 2025 +0000
+++ b/qiime2__alignment__mask.xml	Wed Jan 28 16:10:52 2026 +0000
@@ -1,22 +1,22 @@
 <?xml version='1.0' encoding='utf-8'?>
 <!--
-Copyright (c) 2025, QIIME 2 development team.
+Copyright (c) 2026, QIIME 2 development team.
 
 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
 -->
 <!--
 This tool was automatically generated by:
-    q2galaxy (version: 2025.10.0)
+    q2galaxy (version: 2026.1.0)
 for:
-    qiime2 (version: 2025.10.0)
+    qiime2 (version: 2026.1.0)
 -->
-<tool name="qiime2 alignment mask" id="qiime2__alignment__mask" version="2025.10.0+q2galaxy.2025.10.0" profile="22.05" license="BSD-3-Clause">
+<tool name="qiime2 alignment mask" id="qiime2__alignment__mask" version="2026.1.0+q2galaxy.2026.1.0" profile="22.05" license="BSD-3-Clause">
     <description>Positional conservation and gap filtering.</description>
     <xrefs>
         <xref type="bio.tools">qiime2</xref>
     </xrefs>
     <requirements>
-        <container type="docker">quay.io/qiime2/amplicon:2025.10</container>
+        <container type="docker">quay.io/qiime2/amplicon:2026.1</container>
     </requirements>
     <version_command>q2galaxy version alignment</version_command>
     <command detect_errors="exit_code">q2galaxy run alignment mask '$inputs'</command>
@@ -24,11 +24,12 @@
         <inputs name="inputs" data_style="staging_path_and_source_path"/>
     </configfiles>
     <inputs>
-        <param name="alignment" type="data" format="qza" label="alignment: FeatureData[AlignedSequence]" help="[required]  The alignment to be masked.">
+        <param name="alignment" type="data" format="qza" label="alignment: FeatureData[AlignedSequence]¹ | FeatureData[AlignedProteinSequence]²" help="[required]  The alignment to be masked.">
             <options options_filter_attribute="metadata.semantic_type">
                 <filter type="add_value" value="FeatureData[AlignedSequence]"/>
+                <filter type="add_value" value="FeatureData[AlignedProteinSequence]"/>
             </options>
-            <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureData[AlignedSequence]']</validator>
+            <validator type="expression" message="Incompatible type">hasattr(value.metadata, "semantic_type") and value.metadata.semantic_type in ['FeatureData[AlignedProteinSequence]', 'FeatureData[AlignedSequence]']</validator>
         </param>
         <section name="__q2galaxy__GUI__section__extra_opts__" title="Click here for additional options">
             <param name="max_gap_frequency" type="float" min="0" max="1" value="1.0" label="max_gap_frequency: Float % Range(0, 1, inclusive_end=True)" help="[default: 1.0]  The maximum relative frequency of gap characters in a column for the column to be retained. This relative frequency must be a number between 0.0 and 1.0 (inclusive), where 0.0 retains only those columns without gap characters, and 1.0 retains all columns regardless of gap character frequency."/>