# HG changeset patch
# User q2d2
# Date 1762016879 0
# Node ID 1621ff6b9f048ba1edcf3bbf828fbdd9479050ed

planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__boots commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b

diff -r 000000000000 -r 1621ff6b9f04 qiime2__boots__alpha_average.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/qiime2__boots__alpha_average.xml	Sat Nov 01 17:07:59 2025 +0000
@@ -0,0 +1,67 @@
+<?xml version='1.0' encoding='utf-8'?>
+<!--
+Copyright (c) 2025, QIIME 2 development team.
+
+Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
+-->
+<!--
+This tool was automatically generated by:
+    q2galaxy (version: 2025.10.0)
+for:
+    qiime2 (version: 2025.10.0)
+-->
+<tool name="qiime2 boots alpha-average" id="qiime2__boots__alpha_average" version="2025.10.0+q2galaxy.2025.10.0" profile="22.05" license="BSD-3-Clause">
+    <description>Average alpha diversity vectors.</description>
+    <xrefs>
+        <xref type="bio.tools">qiime2</xref>
+    </xrefs>
+    <requirements>
+        <container type="docker">quay.io/qiime2/amplicon:2025.10</container>
+    </requirements>
+    <version_command>q2galaxy version boots</version_command>
+    <command detect_errors="exit_code">q2galaxy run boots alpha_average '$inputs'</command>
+    <configfiles>
+        <inputs name="inputs" data_style="staging_path_and_source_path"/>
+    </configfiles>
+    <inputs>
+        <param name="data" type="data" format="qza" label="data: Collection[SampleData[AlphaDiversity]]" help="[required]  Alpha diversity vectors to be averaged." multiple="true">
+            <options options_filter_attribute="metadata.semantic_type">
+                <filter type="add_value" value="SampleData[AlphaDiversity]"/>
+            </options>
+        </param>
+        <param name="average_method" type="select" label="average_method: Str % Choices('mean', 'median')" display="radio">
+            <option value="__q2galaxy__::literal::None">Selection required</option>
+            <option value="mean">mean</option>
+            <option value="median">median</option>
+            <validator type="expression" message="Please verify this parameter.">value != '__q2galaxy__::literal::None'</validator>
+        </param>
+    </inputs>
+    <outputs>
+        <data name="average_alpha_diversity" format="qza" label="${tool.name} on ${on_string}: average_alpha_diversity.qza" from_work_dir="average_alpha_diversity.qza"/>
+    </outputs>
+    <tests/>
+    <help>
+QIIME 2: boots alpha-average
+============================
+Average alpha diversity vectors.
+
+
+Outputs:
+--------
+:average_alpha_diversity.qza: The average alpha diversity vector.
+
+|  
+
+Description:
+------------
+Compute the per-sample average across a collection of alpha diversity vectors computed from the same samples.
+
+
+|  
+
+</help>
+    <citations>
+        <citation type="doi">https://doi.org/10.12688/f1000research.156295.1</citation>
+        <citation type="doi">10.1038/s41587-019-0209-9</citation>
+    </citations>
+</tool>
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diff -r 000000000000 -r 1621ff6b9f04 test-data/beta_collection.test0.table.qza
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diff -r 000000000000 -r 1621ff6b9f04 test-data/core_metrics.test0.metadata.tsv
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/core_metrics.test0.metadata.tsv	Sat Nov 01 17:07:59 2025 +0000
@@ -0,0 +1,6 @@
+sample-id	even-or-odd
+#q2:types	categorical
+S1	odd
+S2	even
+S3	odd
+S4	even
diff -r 000000000000 -r 1621ff6b9f04 test-data/core_metrics.test0.table.qza
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diff -r 000000000000 -r 1621ff6b9f04 test-data/core_metrics.test1.metadata.tsv
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/core_metrics.test1.metadata.tsv	Sat Nov 01 17:07:59 2025 +0000
@@ -0,0 +1,6 @@
+sample-id	even-or-odd
+#q2:types	categorical
+S1	odd
+S2	even
+S3	odd
+S4	even
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diff -r 000000000000 -r 1621ff6b9f04 test-data/kmer_diversity.test0.metadata.tsv
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/kmer_diversity.test0.metadata.tsv	Sat Nov 01 17:07:59 2025 +0000
@@ -0,0 +1,6 @@
+sample-id	even-or-odd
+#q2:types	categorical
+S1	odd
+S2	even
+S3	odd
+S4	even
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