# HG changeset patch
# User q2d2
# Date 1714078396 0
# Node ID 3bdf127442edf65491542ce824a26188b5e3ba86
# Parent  fe99db171ce523bd9c07d56345a789b85d18eceb
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__composition commit 389df0134cd0763dcf02aac6e623fc15f8861c1e

diff -r fe99db171ce5 -r 3bdf127442ed qiime2__composition__ancombc.xml
--- a/qiime2__composition__ancombc.xml	Thu Jun 08 19:34:16 2023 +0000
+++ b/qiime2__composition__ancombc.xml	Thu Apr 25 20:53:16 2024 +0000
@@ -1,24 +1,24 @@
 <?xml version='1.0' encoding='utf-8'?>
 <!--
-Copyright (c) 2023, QIIME 2 development team.
+Copyright (c) 2024, QIIME 2 development team.
 
 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
 -->
 <!--
 This tool was automatically generated by:
-    q2galaxy (version: 2023.5.0)
+    q2galaxy (version: 2024.2.1)
 for:
-    qiime2 (version: 2023.5.1)
+    qiime2 (version: 2024.2.0)
 -->
-<tool name="qiime2 composition ancombc" id="qiime2__composition__ancombc" version="2023.5.0+q2galaxy.2023.5.0.2" profile="22.05" license="BSD-3-Clause">
+<tool name="qiime2 composition ancombc" id="qiime2__composition__ancombc" version="2024.2.0+q2galaxy.2024.2.1" profile="22.05" license="BSD-3-Clause">
     <description>Analysis of Composition of Microbiomes with Bias Correction</description>
     <requirements>
-        <container type="docker">quay.io/qiime2/core:2023.5</container>
+        <container type="docker">quay.io/qiime2/amplicon:2024.2</container>
     </requirements>
     <version_command>q2galaxy version composition</version_command>
     <command detect_errors="exit_code">q2galaxy run composition ancombc '$inputs'</command>
     <configfiles>
-        <inputs name="inputs" data_style="paths"/>
+        <inputs name="inputs" data_style="staging_path_and_source_path"/>
     </configfiles>
     <inputs>
         <param name="table" type="data" format="qza" label="table: FeatureTable[Frequency]" help="[required]  The feature table to be used for ANCOM-BC computation.">
@@ -68,7 +68,6 @@
                     <validator type="expression" message="Please verify this parameter.">value is not None and len(value) &gt; 0</validator>
                 </param>
             </repeat>
-            <param name="neg_lb" type="boolean" truevalue="__q2galaxy__::literal::True" falsevalue="__q2galaxy__::literal::False" label="neg_lb: Bool" help="[default: No]  Whether to classify a taxon as a structural zero using its asymptotic lower bound."/>
             <param name="tol" type="float" value="1e-05" label="tol: Float" help="[default: 1e-05]  The iteration convergence tolerance for the E-M algorithm."/>
             <param name="max_iter" type="integer" value="100" label="max_iter: Int" help="[default: 100]  The maximum number of iterations for the E-M algorithm."/>
             <param name="conserve" type="boolean" truevalue="__q2galaxy__::literal::True" falsevalue="__q2galaxy__::literal::False" label="conserve: Bool" help="[default: No]  Whether to use a conservative variance estimator for the test statistic. It is recommended if the sample size is small and/or the number of differentially abundant taxa is believed to be large."/>
diff -r fe99db171ce5 -r 3bdf127442ed test-data/ancombc.test0.table.qza
Binary file test-data/ancombc.test0.table.qza has changed
diff -r fe99db171ce5 -r 3bdf127442ed test-data/ancombc.test1.table.qza
Binary file test-data/ancombc.test1.table.qza has changed