# HG changeset patch
# User q2d2
# Date 1762016980 0
# Node ID be06c0928b488c0c2d608b23855a0abcb38218d7
# Parent  d6add7288bb04fda135d80e2d91c8d1ee376c80f
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__composition commit 64ed09f1f1c680ad8373d261bd6be43a4f8a8d5b

diff -r d6add7288bb0 -r be06c0928b48 qiime2__composition__ancombc2.xml
--- a/qiime2__composition__ancombc2.xml	Tue Jul 15 21:47:33 2025 +0000
+++ b/qiime2__composition__ancombc2.xml	Sat Nov 01 17:09:40 2025 +0000
@@ -6,17 +6,17 @@
 -->
 <!--
 This tool was automatically generated by:
-    q2galaxy (version: 2025.7.0)
+    q2galaxy (version: 2025.10.0)
 for:
-    qiime2 (version: 2025.7.0)
+    qiime2 (version: 2025.10.0)
 -->
-<tool name="qiime2 composition ancombc2" id="qiime2__composition__ancombc2" version="2025.7.0+q2galaxy.2025.7.0" profile="22.05" license="BSD-3-Clause">
+<tool name="qiime2 composition ancombc2" id="qiime2__composition__ancombc2" version="2025.10.0+q2galaxy.2025.10.0" profile="22.05" license="BSD-3-Clause">
     <description>ANCOM-BC2: Analysis of Composition of Microbiomes with Bias Correction 2.</description>
     <xrefs>
         <xref type="bio.tools">qiime2</xref>
     </xrefs>
     <requirements>
-        <container type="docker">quay.io/qiime2/amplicon:2025.7</container>
+        <container type="docker">quay.io/qiime2/amplicon:2025.10</container>
     </requirements>
     <version_command>q2galaxy version composition</version_command>
     <command detect_errors="exit_code">q2galaxy run composition ancombc2 '$inputs'</command>
@@ -163,6 +163,8 @@
 ------------
 Calls the `ancombc2` function of the ANCOMBC software package. See the ANCOM-BC2 publication and source code for details.
 
+Sensitivity Analysis for Pseudo-Count Addition: To assess robustness, a series of pseudo-counts (0.01 to 0.5, in 0.01 increments) is added to zero counts, and a linear model is fitted to the bias-corrected log-abundance data for each. A sensitivity score is calculated as the proportion of p-values above the specified alpha. Taxa with consistent significance across all pseudo-counts, and agreement with complete-data results, are flagged as robust (diff_robust = TRUE). Note: Results depend on the selected alpha value.
+
 Examples:
 ---------
 
diff -r d6add7288bb0 -r be06c0928b48 test-data/ancombc.test0.table.qza
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diff -r d6add7288bb0 -r be06c0928b48 test-data/ancombc.test1.table.qza
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diff -r d6add7288bb0 -r be06c0928b48 test-data/ancombc2.test0.table.qza
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diff -r d6add7288bb0 -r be06c0928b48 test-data/ancombc2.test1.table.qza
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